This is a package for significance analysis of Microarrays for differential expression analysis, RNAseq data and related problems.

This package provides tools to parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

Remake is an enhanced version of GNU Make that adds improved error reporting, better tracing, profiling, and a debugger.

This package converts back and forth between two representations of a convex polytope: as solution of a set of linear equalities and inequalities and as convex hull of set of points and rays. Also does linear programming and redundant generator elimination. All functions can use exact infinite-precision rational arithmetic.

This package implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.

Data with irregular spatial support, such as runoff related data or data from administrative units, can with rtop be interpolated to locations without observations with the top-kriging method. A description of the package is given by Skøien et al (2014) <doi:10.1016/j.cageo.2014.02.009>.

This package allows you to render vector-based SVG images into high-quality custom-size bitmap arrays using the librsvg2 library. The resulting bitmap can be written to e.g. PNG, JPEG or WEBP format. In addition, the package can convert images directly to various formats such as PDF or PostScript.

The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.

Function using lemmatization to classify educational programs according to the CINE(Classification International Normalized of Education) for Peru.

Wrapper functions to model and extract various quantitative information from absorption spectra of chromophoric dissolved organic matter (CDOM).

Extended techniques for generalized linear models (GLMs), especially for binary responses, including parametric links and heteroscedastic latent variables.

Sequences encoding by using the chaos game representation. Löchel et al. (2019) <doi:10.1093/bioinformatics/btz493>.

This package provides a function to estimate panel-corrected standard errors. Data may contain balanced or unbalanced panels.

Estimation and Prediction Functions Using Bayesian Hierarchical Spatial Finlay-Wilkinson Model for Analysis of Multi-Environment Field Trials.

Maximum likelihood tools to fit and compare models of species abundance distributions and of species rank-abundance distributions.

Return the first four moments of the SMN distributions (Normal, Student-t, Pearson VII, Slash or Contaminated Normal).

This package provides convenience functions for data preparation and modeling often used in analytical customer relationship management (aCRM).

This package provides tools for measuring inequality, concentration, and poverty measures. It provides both empirical and theoretical Lorenz curves.

This package provides a parallel backend for the %dopar% function using the multicore functionality of the parallel package.

This package implements the libyaml YAML 1.1 parser and emitter (http://pyyaml.org/wiki/LibYAML) for R.

This package provides functions for testing affine hypotheses on the regression coefficient vector in regression models with autocorrelated errors.

Quickly imports, processes, analyzes, and visualizes mass-spectrometric data. Includes functions for easily extracting specific data and measurements from large (multi-gigabyte) raw Bruker data files, as well as a set of S3 object classes for manipulating and measuring mass spectrometric peaks and plotting peaks and spectra using the ggplot2 package.

This package provides methods and tools for Singular Spectrum Analysis including decomposition, forecasting and gap-filling for univariate and multivariate time series. General description of the methods with many examples can be found in the book Golyandina (2018, <doi:10.1007/978-3-662-57380-8>). See citation("Rssa") for details.

This is a package for operations on triangular meshes based on VCGLIB. This package integrates nicely with the R-package rgl to render the meshes processed by Rvcg. The Visualization and Computer Graphics Library (VCG for short) is a library for manipulation, processing and displaying with OpenGL of triangle and tetrahedral meshes.