This package provides functions for the input/output and visualization of medical imaging data that follow either the ANALYZE, NIfTI or AFNI formats. This package is part of the Rigorous Analytics bundle.
latex2exp parses and converts LaTeX math formulas to R's plotmath expressions, used to enter mathematical formulas and symbols to be rendered as text, axis labels, etc. throughout R's plotting system.
Bindings to tesseract: an optical character recognition (OCR) engine that supports over 100 languages. The engine is highly configurable in order to tune the detection algorithms and obtain the best possible results.
Sequel provides thread safety, connection pooling and a concise DSL for constructing SQL queries and table schemas. It includes a comprehensive ORM layer for mapping records to Ruby objects and handling associated records.
Erubis is a fast implementation of embedded Ruby (eRuby) with several features such as multi-language support, auto escaping, auto trimming spaces around <% %>, a changeable embedded pattern, and Ruby on Rails support.
SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.
Static code compilation of a shiny app given an R function (into ui.R and server.R files or into a shiny app object). See examples at <https://github.com/alekrutkowski/autoshiny>.
This package contains a variety of methods to generate typical causal inference estimates using Bayesian Additive Regression Trees (BART) as the underlying regression model (Hill (2012) <doi:10.1198/jcgs.2010.08162>).
Generation of multiple binary and continuous non-normal variables simultaneously given the marginal characteristics and association structure based on the methodology proposed by Demirtas et al. (2012) <DOI:10.1002/sim.5362>.
Given response y, continuous predictor x, and covariate matrix, the relationship between E(y) and x is estimated with a shape constrained regression spline. Function outputs fits and various types of inference.
An implementation of methods for causal discovery in a structural causal model where the conditional distribution of the target node is described by a generalized linear model conditional on its causal parents.
Computes the maximum likelihood estimator, the smoothed maximum likelihood estimator and pointwise bootstrap confidence intervals for the distribution function under current status data. Groeneboom and Hendrickx (2017) <doi:10.1214/17-EJS1345>.
Evaluate arbitrary function calls using workers on HPC schedulers in single line of code. All processing is done on the network without accessing the file system. Remote schedulers are supported via SSH.
Wrangle country data more effectively and quickly. This package contains functions to easily identify and convert country names, download country information, merge country data from different sources, and make quick world maps.
Apply styles to tag elements directly and with the .style pronoun. Using the pronoun, styles are created within the context of a tag element. Change borders, backgrounds, text, margins, layouts, and more.
This package provides tools for detecting XOR-like patterns in variable pairs in two-class data sets. Includes visualizations for pattern exploration and reporting capabilities with both text and HTML output formats.
Project scaffolding and workflow tools for reproducible data science. Manages packages, tracks data integrity, handles database connections, generates notebooks, and publishes to S3-compatible storage. More information at <https://framework.table1.org>.
Color palettes inspired by the works of Mexican painters and muralists. The package includes functions that return vectors of colors and also functions to use color and fill scales in ggplot2 visualizations.
This package provides functions for generating variants of curves: restricted cubic spline, periodic restricted cubic spline, periodic cubic spline. Periodic splines can be used to model data that has periodic nature / seasonality.
Send push notifications to mobile devices or the desktop using Pushover <https://pushover.net>. These notifications can display things such as results, job status, plots, or any other text or numeric data.
This package provides functions to take samples of data, sample size estimation and getting useful estimators such as total, mean, proportion about its population using simple random, stratified, systematic and cluster sampling.
This package produces LaTeX code, HTML/CSS code and ASCII text for well-formatted tables that hold regression analysis results from several models side-by-side, as well as summary statistics.
By calling the SimpleTex <https://simpletex.cn/> open API implements text and mathematical formula recognition on the image, and the output formula can be used directly with Markdown and LaTeX'.
An open-source R package for structuring, maintaining, running, and debugging statistical simulations on both local and cluster-based computing environments.See full documentation at <https://avi-kenny.github.io/SimEngine/>.