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Facilitates access to sample datasets from the EunomiaDatasets repository (<https://github.com/ohdsi/EunomiaDatasets>).
This package provides various functions for reading and preparing the Panel Study of Income Dynamics (PSID) for longitudinal analysis, including functions that read the PSID's fixed width format files directly into R, rename all of the PSID's longitudinal variables so that recurring variables have consistent names across years, simplify assembling longitudinal datasets from cross sections of the PSID Family Files, and export the resulting PSID files into file formats common among other statistical programming languages ('SAS', STATA', and SPSS').
Fit and visualize the results of a Bayesian analysis of networks commonly found in psychology. The package supports cross-sectional network models fitted using the packages BDgraph', bgms and BGGM', as well as network comparison tests fitted using the packages bgms and BBGM'. The package provides the parameter estimates, posterior inclusion probabilities, inclusion Bayes factor, and the posterior density of the parameters. In addition, for BDgraph and bgms it allows to assess the posterior structure space. Furthermore, the package comes with an extensive suite for visualizing results.
This package provides a set of functions for computing expected permutation matrices given a matrix of likelihoods for each individual assignment. It has been written to accompany the forthcoming paper Computing expectations and marginal likelihoods for permutations'. Publication details will be updated as soon as they are finalized.
Automatic Generation of Exams in R for Sakai'. Question templates in the form of the exams package (see <https://www.r-exams.org/>) are transformed into XML format required by Sakai'.
Interact with the FRED API, <https://fred.stlouisfed.org/docs/api/fred/>, to fetch observations across economic series; find information about different economic sources, releases, series, etc.; conduct searches by series name, attributes, or tags; and determine the latest updates. Includes functions for creating panels of related variables with minimal effort and datasets containing data sources, releases, and popular FRED tags.
This includes a dataset on the outcomes of the USA presidential elections since 1920, and various predictors, as used in <https://www.vanderwalresearch.com/blog/15-elections>.
The Delphi Epidata API provides real-time access to epidemiological surveillance data for influenza, COVID-19', and other diseases for the USA at various geographical resolutions, both from official government sources such as the Center for Disease Control (CDC) and Google Trends and private partners such as Facebook and Change Healthcare'. It is built and maintained by the Carnegie Mellon University Delphi research group. To cite this API: David C. Farrow, Logan C. Brooks, Aaron Rumack', Ryan J. Tibshirani', Roni Rosenfeld (2015). Delphi Epidata API. <https://github.com/cmu-delphi/delphi-epidata>.
Package EDISON (Estimation of Directed Interactions from Sequences Of Non-homogeneous gene expression) runs an MCMC simulation to reconstruct networks from time series data, using a non-homogeneous, time-varying dynamic Bayesian network. Networks segments and changepoints are inferred concurrently, and information sharing priors provide a reduction of the inference uncertainty.
This package provides a plotting package for climate science and services. Provides a set of functions for visualizing climate data, including maps, time series, scorecards and other diagnostics. Some functions are adapted and extended from the s2dv and CSTools packages (Manubens et al. (2018) <doi:10.1016/j.envsoft.2018.01.018>; Pérez-Zanón et al. (2022) <doi:10.5194/gmd-15-6115-2022>), with more consistent and integrated functionalities.
This package performs hypothesis testing for general block designs with empirical likelihood. The core computational routines are implemented using the Eigen C++ library and RcppEigen interface, with OpenMP for parallel computation. Details of the methods are given in Kim, MacEachern, and Peruggia (2023) <doi:10.1080/10485252.2023.2206919>. This work was supported by the U.S. National Science Foundation under Grants No. SES-1921523 and DMS-2015552.
This package provides tools for measuring empirically the effects of entry in concentrated markets, based in Bresnahan and Reiss (1991) <https://www.jstor.org/stable/2937655>.
Este paquete pretende apoyar el proceso enseñanza-aprendizaje de estadà stica descriptiva e inferencial. Las funciones contenidas en el paquete estadistica cubren los conceptos básicos estudiados en un curso introductorio. Muchos conceptos son ilustrados con gráficos dinámicos o web apps para facilitar su comprensión. This package aims to help the teaching-learning process of descriptive and inferential statistics. The functions contained in the package estadistica cover the basic concepts studied in a statistics introductory course. Many concepts are illustrated with dynamic graphs or web apps to make the understanding easier. See: Esteban et al. (2005, ISBN: 9788497323741), Newbold et al.(2019, ISBN:9781292315034 ), Murgui et al. (2002, ISBN:9788484424673) .
Enables launching a series of simulations of a computer code from the R session, and to retrieve the simulation outputs in an appropriate format for post-processing treatments. Five sequential sampling schemes and three coupled-to-MCMC schemes are implemented.
Ensemble Model Output Statistics to create probabilistic forecasts from ensemble forecasts and weather observations.
This package provides a user friendly, easy to understand way of doing event history regression for marginal estimands of interest, including the cumulative incidence and the restricted mean survival, using the pseudo observation framework for estimation. For a review of the methodology, see Andersen and Pohar Perme (2010) <doi:10.1177/0962280209105020> or Sachs and Gabriel (2022) <doi:10.18637/jss.v102.i09>. The interface uses the well known formulation of a generalized linear model and allows for features including plotting of residuals, the use of sampling weights, and corrected variance estimation.
Support for measurement errors in R vectors, matrices and arrays: automatic uncertainty propagation and reporting. Documentation about errors is provided in the paper by Ucar, Pebesma & Azcorra (2018, <doi:10.32614/RJ-2018-075>), included in this package as a vignette; see citation("errors") for details.
Simulates cyclic voltammetry, linear-sweep voltammetry (both with and without stirring of the solution), and single-pulse and double-pulse chronoamperometry and chronocoulometry experiments using the implicit finite difference method outlined in Gosser (1993, ISBN: 9781560810261) and in Brown (2015) <doi:10.1021/acs.jchemed.5b00225>. Additional functions provide ways to display and to examine the results of these simulations. The primary purpose of this package is to provide tools for use in courses in analytical chemistry.
This package provides function to transform latex math expressions into format HTML or Office Open XML Math'. The XML result can then be included in HTML', Microsoft Word documents or Microsoft PowerPoint presentations by using a Markdown document or the R package officer'.
This package provides methods for fitting various extreme value distributions with parameters of generalised additive model (GAM) form are provided. For details of distributions see Coles, S.G. (2001) <doi:10.1007/978-1-4471-3675-0>, GAMs see Wood, S.N. (2017) <doi:10.1201/9781315370279>, and the fitting approach see Wood, S.N., Pya, N. & Safken, B. (2016) <doi:10.1080/01621459.2016.1180986>. Details of how evgam works and various examples are given in Youngman, B.D. (2022) <doi:10.18637/jss.v103.i03>.
Build entity relationship diagrams (ERD) to specify the nature of the relationship between tables in a database.
This package provides fast dynamic-programming algorithms in C++'/'Rcpp (with pure R fallbacks) for the exact finite-sample distributions and p-values of Christoffersen (1998) independence (IND) and conditional-coverage (CC) VaR backtests. For completeness, it also provides the exact unconditional-coverage (UC) test following Kupiec (1995) via a closed-form binomial enumeration. See Christoffersen (1998) <doi:10.2307/2527341> and Kupiec (1995) <doi:10.3905/jod.1995.407942>.
This package implements estimation methods for parameters of common distribution families. The common d, p, q, r function family for each distribution is enriched with the ll, e, and v counterparts, computing the log-likelihood, performing estimation, and calculating the asymptotic variance - covariance matrix, respectively. Parameter estimation is performed analytically whenever possible.
This package contains a set of clustering methods and evaluation metrics to select the best number of the clusters based on clustering stability. Two references describe the methodology: Fahimeh Nezhadmoghadam, and Jose Tamez-Pena (2021)<doi:10.1016/j.compbiomed.2021.104753>, and Fahimeh Nezhadmoghadam, et al.(2021)<doi:10.2174/1567205018666210831145825>.