This package provides a wrapper for the U.S. Census Bureau APIs that returns data frames of Census data and metadata. Available datasets include the Decennial Census, American Community Survey, Small Area Health Insurance Estimates, Small Area Income and Poverty Estimates, Population Estimates and Projections, and more.
Statistical hypothesis testing using the Delta method as proposed by Deng et al. (2018) <doi:10.1145/3219819.3219919>. This method replaces the standard variance estimation formula in the Z-test with an approximate formula derived via the Delta method, which can account for within-user correlation.
Solving large scale distance weighted discrimination. The main algorithm is a symmetric Gauss-Seidel based alternating direction method of multipliers (ADMM) method. See Lam, X.Y., Marron, J.S., Sun, D.F., and Toh, K.C. (2018) <doi:10.48550/arXiv.1604.05473> for more details.
Connection to the Fitbit Web API <https://dev.fitbit.com/build/reference/web-api/> by including ggplot2 Visualizations, Leaflet and 3-dimensional Rayshader Maps. The 3-dimensional Rayshader Map requires the installation of the CopernicusDEM R package which includes the 30- and 90-meter elevation data.
Miscellaneous utilities, tools and helper functions for finding and searching files on disk, searching for and removing R objects from the workspace. Does not import or depend on any third party package, but on core R only (i.e. it may depend on packages with priority base').
Use R to access to the FMP Cloud API <https://fmpcloud.io/> and Financial Modeling Prep API <https://financialmodelingprep.com/developer/docs/>. Data available includes stock prices, market indexes, company fundamentals, 13F holdings data, and much more. A valid API token must be set to enable functions.
This package provides classes and functions for working with IP (Internet Protocol) addresses and networks, inspired by the Python ipaddress module. Offers full support for both IPv4 and IPv6 (Internet Protocol versions 4 and 6) address spaces. It is specifically designed to work well with the tidyverse'.
This package implements Bayesian models to analyze data from tracer addition experiments. The implemented method was originally described in the article "A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020) <doi:10.1086/708546>.
This package provides a unified data layer for single-cell, spatial and bulk T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject, but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or VDJ sequencing data.
This is a set of simple utility functions to perform mutual conversion between the current Japanese calendar system that Wareki, the old Japanese calendar system that the Kyureki calendar and the Julian and Gregorian calendar. To calculate each calendar method, it converts to the Julian Day Number.
This package provides tools for keeping track of information, named "keys", about rows of data frame like objects. This is done by creating special attribute "keys" which is updated after every change in rows (subsetting, ordering, etc.). This package is designed to work tightly with dplyr package.
Exact and approximation algorithms for variable-subset selection in ordinary linear regression models. Either compute all submodels with the lowest residual sum of squares, or determine the single-best submodel according to a pre-determined statistical criterion. Hofmann et al. (2020) <doi:10.18637/jss.v093.i03>.
Different examples and methods for testing (including different proposals described in Ameijeiras-Alonso et al., 2019 <DOI:10.1007/s11749-018-0611-5>) and exploring (including the mode tree, mode forest and SiZer) the number of modes using nonparametric techniques <DOI:10.18637/jss.v097.i09>.
Evaluate whether a microbiome sample is a mixture of two samples, by fitting a model for the number of read counts as a function of single nucleotide polymorphism (SNP) allele and the genotypes of two potential source samples. Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.
Wrapper around the Unix join facility which is more efficient than the built-in R routine merge(). The package enables the joining of multiple files on disk at once. The files can be compressed and various filters can be deployed before joining. Compiles only under Unix.
Clustering of data under a non-ignorable missingness mechanism. Clustering is achieved by a semi-parametric mixture model and missingness is managed by using the pattern-mixture approach. More details of the approach are available in Du Roy de Chaumaray et al. (2020) <arXiv:2009.07662>.
Makes it easy to display descriptive information on a data set. Getting an easy overview of a data set by displaying and visualizing sample information in different tables (e.g., time and scope conditions). The package also provides publishable LaTeX code to present the sample information.
It provides users with functions to parse International Phonetic Alphabet (IPA) transcriptions into individual phones (tokenisation) based on default IPA symbols and optional user specified multi-character phones. The tokenised transcriptions can be used for obtaining counts of phones or for searching for words matching phonetic patterns.
Assessment of habitat selection by means of the permutation-based combination of sign tests (Fattorini et al., 2014 <DOI:10.1007/s10651-013-0250-7>). To exemplify the application of this procedure, habitat selection is assessed for a population of European Brown Hares settled in central Italy.
Calculate geolocations by light using template matching. The routine uses a calibration free optimization of a sky illuminance model to determine locations robustly using a template matching approach, as described by Ekstrom (2004) <https://nipr.repo.nii.ac.jp/records/2496>, and behaviourly informed constraints (step-selection).
Helpers for addressing the issue of disconnected spatial units. It allows for convenient adding and removal of neighbourhood connectivity between areal units prior to modelling, with the visual aid of maps. Post-modelling, it reduces the human workload for extracting, tidying and mapping predictions from areal models.
The primary goal of Serpstat API <https://api-docs.serpstat.com/docs/serpstat-public-api/jenasqbwtxdlr-introduction-to-serpstat-api> is to reduce manual SEO (search engine optimization) and PPC (pay-per-click) tasks. You can automate your keywords research or competitors analysis with this API wrapper.
This package provides a suite of functions that allow a full, fast, and efficient Bayesian treatment of the Bradley--Terry model. Prior assumptions about the model parameters can be encoded through a multivariate normal prior distribution. Inference is performed using a latent variable representation of the model.
This package provides methods for computing spatial, temporal, and spatiotemporal statistics as described in Gouhier and Guichard (2014) <doi:10.1111/2041-210X.12188>. These methods include empirical univariate, bivariate and multivariate variograms; fitting variogram models; phase locking and synchrony analysis; generating autocorrelated and cross-correlated matrices.