SlamDunk is a fully automated tool for automated, robust, scalable and reproducible SLAMseq data analysis. Diagnostic plotting features and a MultiQC plugin will make your SLAMseq data ready for immediate QA and interpretation.

pyserial provide serial port bindings for Python. It supports different byte sizes, stop bits, parity and flow control with RTS/CTS and/or Xon/Xoff. The port is accessed in RAW mode.

Lfdfiles is a Python library and console script for reading, writing, converting, and viewing many of the proprietary file formats used to store experimental data and metadata at the Laboratory for Fluorescence Dynamics.

This Python package provides progress reporting for visual of progress of long running operations. There are multiple choices of progress bars and spinners, with customizable options, such as width, fill character, and suffix.

This package provides a converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler). Both hic and cool files describe Hi-C contact matrices.

Coverage measures code coverage, typically during test execution. It uses the code analysis tools and tracing hooks provided in the Python standard library to determine which lines are executable, and which have been executed.

This package provides units of measure as required by the Climate and Forecast (CF) metadata conventions. Provision of a wrapper class to support Unidata/UCAR UDUNITS-2 library, and the cftime calendar functionality.

The sendgrid Python library allows access to the SendGrid Web API v3. Version 3+ of the library provides full support for all SendGrid Web API v3 endpoints, including the new v3 /mail/send.

python-grid5000 is a python package wrapping the Grid5000 REST API. You can use it as a library in your python project or you can explore the Grid5000 resources interactively using the embedded shell.

Pendulum is a drop-in replacement for the standard datetime class, providing an alternative API. As it inherits from the standard datetime all datetime instances can be replaced by Pendulum instances.

Testpath is a collection of utilities for Python code working with files and commands. It contains functions to check things on the file system, and tools for mocking system commands and recording calls to those.

Marsilea is a Python library for creating composable visualizations in a declarative way. It is built on top of Matplotlib and provides a high-level API for you to puzzle different visualizations together like logo.

The pyspnego Python library handles Negotiate, NTLM, Kerberos (SPNEGO) and CredSSP authentication. It also includes a packet parser that can be used to decode raw NTLM/SPNEGO/Kerberos tokens into a human readable format.

Graphene is a Python library for building GraphQL schemas/types. A GraphQL schema describes your data model, and provides a GraphQL server with an associated set of resolve methods that know how to fetch data.

PetroFit is a package for calculating Petrosian properties, such as radii and concentration indices, as well as fitting galaxy light profiles. In particular, PetroFit includes tools for performing accurate photometry, segmentations, Petrosian profiling, and Sérsic fitting.

A pure-python universal errors-and-erasures Reed-Solomon Codec, based on the tutorial at Wikiversity. This is a burst-type implementation, so that it supports any Galois field higher than 2^3, but not binary streams.

Schedule is an in-process scheduler for periodic jobs that uses the builder pattern for configuration. Schedule lets you run Python functions (or any other callable) periodically at pre-determined intervals using a simple, human-friendly syntax.

Gunicorn 'Green Unicorn' is a Python WSGI HTTP Server for UNIX. It's a pre-fork worker model. The Gunicorn server is broadly compatible with various web frameworks, simply implemented, light on server resources, and fairly speedy.

aiomysql is a driver for accessing a MySQL database from the asyncio Python framework. It depends on and reuses most parts of PyMySQL. aiomysql tries to preserve the same API as the aiopg library.

Paramiko is a python implementation of the SSHv2 protocol, providing both client and server functionality. While it leverages a Python C extension for low level cryptography (PyCrypto), Paramiko itself is a pure Python interface around SSH networking concepts.

wsgiprox is a Python WSGI (Web Server Gateway Interface) middle-ware for adding HTTP and HTTPS proxy support to a WSGI application. The library accepts HTTP and HTTPS proxy connections, and routes them to a designated prefix.

This package is a tool for cross-compiling extension modules. It creates a special virtual environment such that pip or setup.py will cross compile packages for you, usually with no further work on your part.

The apptools project provides a set of packages that Enthought has found useful in creating a number of applications. It includes features such as a filesystem abstraction, convenience functions for creating loggers, or an application preference manager.

This package provides a Python implementation of John Gruber's Markdown. The library features international input, various Markdown extensions, and several HTML output formats. A command line wrapper markdown_py is also provided to convert Markdown files to HTML.