This package implements Python-style zip for R. Is a more flexible version of cbind.

Selects one model with variable selection FDR controlled at a specified level. A q-value for each potential variable is also returned. The input, variable selection counts over many bootstraps for several levels of penalization, is modeled as coming from a beta-binomial mixture distribution.

Conduct simulations of the Response Adaptive Block Randomization (RABR) design to evaluate its type I error rate, power and operating characteristics for binary and continuous endpoints. For more details of the proposed method, please refer to Zhan et al. (2021) <doi:10.1002/sim.9104>.

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. Its design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specification in R with minimal reliance on external tools or libraries.

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

Assists in the manipulation and processing of linear features with the help of the sf package. Makes use of linear referencing to extract data from most shape files. Reference for this packages methods: Albeke, S.E. et al. (2010) <doi:10.1007/s10980-010-9528-4>.

Resolve the dependency graph of R packages at a specific time point based on the information from various R-hub web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with Rocker <https://rocker-project.org>.

This package provides tools for large-scale identification and advanced visualization of sets of conserved noncoding elements.

This package implements an empirical Bayes approach for large-scale hypothesis testing and false discovery rate estimation.

This package provides numerical simulations, and visualizations, of Hubbell's Unified Neutral Theory of Biodiversity (UNTB).

This package provides tools for the computation of the matrix exponential, logarithm, square root, and related quantities.

This is an R package for dimension reduction based on finite Gaussian mixture modeling of inverse regression.

This package provides the means to plot ggplot2 graphs in the style of the XKCD web comic.

This package provides tools to fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.

Gene set analysis using specific alternative hypotheses. Tests for differential expression, scale and net correlation structure.

Data sets for the book Modern Statistics for Modern Biology', S.P. Holmes and W. Huber.

Data sets used in Cayuela and De la Cruz (2022, ISBN:978-84-8476-833-3).

An R interface to the Stark-Parker implementation of an algorithm for bounded-variable least squares.

This package provides a wrapper for the EZC3D library to work with C3D motion capture data.

Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.

Manage your source code dependencies by decorating your existing R code with special, roxygen'-style comments.

Automatic detection of hyperlinks for packages and calls in the text of rmarkdown or quarto documents.

Perform pairwise likelihood inference in latent autoregressive count models. See Pedeli and Varin (2020) for details.

Client for the Office of National Statistics ('ONS') API <https://api.beta.ons.gov.uk/v1>.