React is an OCaml module for functional reactive programming (FRP). It provides support to program with time varying values: declarative events and signals. React doesn't define any primitive event or signal, it lets the client choose the concrete timeline.

The file renaming utilities (renameutils for short) are a set of programs designed to make renaming of files faster and less cumbersome. The file renaming utilities consists of five programs: qmv, qcp, imv, icp, and deurlname.

This package provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

Perform Canonical correlation between two forms of high demensional genetic data, and associate the first compoent of each form of data with a specific biologically interesting pattern of associations with multiple endpoints. A probe level analysis is also implemented.

We curated 147 of expression array, from 3 species(human,mouse,rat), 3 companies('Affymetrix','Illumina','Agilent'), by aligning the Fasta sequences of all probes of each platform to their corresponding reference genome, and then annotate them to genes.

This package provides functions to create and select graphical themes for the base plotting system. Contains: 1) several custom pre-made themes 2) mechanism for creating new themes by making persistent changes to the graphical parameters of base plots.

Visualizing the types and distribution of elements within bio-sequences. At the same time, We have developed a geom layer, geom_rrect(), that can generate rounded rectangles. No external references are used in the development of this package.

Supports fMRI (functional magnetic resonance imaging) analysis tasks including reading in CIFTI', GIFTI and NIFTI data, temporal filtering, nuisance regression, and aCompCor (anatomical Components Correction) (Muschelli et al. (2014) <doi:10.1016/j.neuroimage.2014.03.028>).

Create descriptive file names with ease. New file names are automatically (but optionally) time stamped and placed in date stamped directories. Streamline your analysis pipeline with input and output file names that have informative tags and proper file extensions.

This is a dataset package for GANPA, which implements a network-based gene weighting approach to pathway analysis. This package includes data useful for GANPA, such as a functional association network, pathways, an expression dataset and multi-subunit proteins.

Providing publication-ready graphs for Multiple sequence alignment. Moreover, it provides a unique solution for visualizing the multiple sequence alignment without the need to do the alignment in each run which is a big limitation in other available packages.

This package provides a ggplot2 extension for visualizing vector fields in two-dimensional space. Provides flexible tools for creating vector and stream field layers, visualizing gradients and potential fields, and smoothing vector and scalar data to estimate underlying patterns.

Interacts with the Glassdoor API <https://www.glassdoor.com/developer/index.htm>. Allows the user to search job statistics, employer statistics, and job progression, where Glassdoor provides a breakdown of other jobs a person did after their current one.

This package provides a runtime type system, allowing users to define and implement interfaces, enums, typed data.frame/data.table, as well as typed functions. This package enables stricter type checking and validation, improving code structure, robustness and reliability.

Simple handling of survey data. Smart handling of meta-information like e.g. variable-labels value-labels and scale-levels. Easy access and validation of meta-information. Useage of value labels and values respectively for subsetting and recoding data.

This package provides model fitting, prediction, and plotting for joint models of longitudinal and multiple time-to-event data, including methods from Rizopoulos (2012) <doi:10.1201/b12208>. Useful for handling complex survival and longitudinal data in clinical research.

This package provides tools for detecting numeric persistence ("spells") and rigidity patterns in time-ordered numeric data. The package identifies periods of stability, computes spell-based rigidity metrics, and provides plain-language interpretations suitable for policy and applied analysis.

This package provides functions to perform paternity exclusion via allele matching, in autopolyploid species having ploidy 4, 6, or 8. The marker data used can be genotype data (copy numbers known) or allelic phenotype data (copy numbers not known).

An R interface to the Python sqlfluff SQL linter and formatter via the reticulate package. Enables linting, fixing, and parsing of SQL queries with support for multiple dialects. Includes special handling for glue SQL syntax with curly-brace placeholders.

This package provides additional convenience functions for gtsummary (Sjoberg et al. (2021) <doi:10.32614/RJ-2021-053>) & gt tables, including automatic variable labeling from dictionaries, standardized missing value display, and consistent formatting helpers for streamlined table styling workflows.

An R shiny user interface for the nlmixr2 (Fidler et al (2019) <doi:10.1002/psp4.12445>) package, designed to simplify the modeling process for users. Additionally, this package includes supplementary functions to further enhances the usage of nlmixr2'.

It implements parametric formulas of soil water retention or conductivity curve. At the moment, only Van Genuchten (for soil water retention curve) and Mualem (for hydraulic conductivity) were implemented. See reference (<http://en.wikipedia.org/wiki/Water_retention_curve>).

Manage time-series data frames across time zones, resolutions, and date ranges, while filling gaps using weekday/hour patterns or simple fill helpers or plotting them interactively. It is designed to work seamlessly with the tidyverse and dygraphs environments.

An alternative for downloading various United States Department of Agriculture (USDA) data from <https://quickstats.nass.usda.gov/> through R. You must sign up for an API token from the mentioned website in order for this package to work.