Selects one model with variable selection FDR controlled at a specified level. A q-value for each potential variable is also returned. The input, variable selection counts over many bootstraps for several levels of penalization, is modeled as coming from a beta-binomial mixture distribution.
Assists in the manipulation and processing of linear features with the help of the sf package. Makes use of linear referencing to extract data from most shape files. Reference for this packages methods: Albeke, S.E. et al. (2010) <doi:10.1007/s10980-010-9528-4>.
Utilities for reading, writing, and managing RCDF files, including encryption and decryption support. It offers a flexible interface for handling data stored in encrypted Parquet format, along with metadata extraction, key management, and secure operations using Advanced Encryption Standard (AES) and Rivest-Shamir-Adleman (RSA) encryption.
Resolve the dependency graph of R packages at a specific time point based on the information from various R-hub web services <https://blog.r-hub.io/>. The dependency graph can then be used to reconstruct the R computational environment with Rocker <https://rocker-project.org>.
Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.
Data sets used in Cayuela and De la Cruz (2022, ISBN:978-84-8476-833-3).
An R interface to the Stark-Parker implementation of an algorithm for bounded-variable least squares.
This package provides a wrapper for the EZC3D library to work with C3D motion capture data.
Model building, surrogate model based optimization and Efficient Global Optimization in combinatorial or mixed search spaces.
Manage your source code dependencies by decorating your existing R code with special, roxygen'-style comments.
Perform pairwise likelihood inference in latent autoregressive count models. See Pedeli and Varin (2020) for details.
Automatic detection of hyperlinks for packages and calls in the text of rmarkdown or quarto documents.
Client for the Office of National Statistics ('ONS') API <https://api.beta.ons.gov.uk/v1>.
This package provides functions to easily convert data to binary formats other programs/machines can understand.
Empirical adjustment of the distribution of variables originating from (regional) climate model simulations using quantile mapping.
Run lapply() calls in parallel by submitting them to gridengine clusters using the qsub command.
Explore synesthesia consistency test data, calculate consistency scores, and classify participant data as valid or invalid.
Datasets used in "Statistical Methods for the Social Sciences" (SMSS) by Alan Agresti and Barbara Finlay.
This package performs the EM algorithm for regression models using Skew Scale Mixtures of Normal Distributions.
This package implements a method for identifying subgroups with superior response relative to the overall sample.
S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Functions, Classes & Methods for estimation, prediction, and simulation (bootstrap) of Variable Length Markov Chain ('VLMC') Models.
An extension for the xml2 package to transform XML documents by applying an xslt style-sheet.
Gene set analysis using specific alternative hypotheses. Tests for differential expression, scale and net correlation structure.