This package provides the means to compile user-supplied C++ functions with Rcpp and retrieve an XPtr that can be passed to other C++ components.

This package provides functions and an RStudio add-in that search a BibTeX or BibLaTeX file to create and insert formatted Markdown citations into the current document.

Alabama stands for Augmented Lagrangian Adaptive Barrier Minimization Algorithm; it is used for optimizing smooth nonlinear objective functions with constraints. Linear or nonlinear equality and inequality constraints are allowed.

Read large text files by splitting them in smaller files. This package also provides some convenient wrappers around fread() and fwrite() from package data.table.

This package provides an implementation of bee swarm plots. The bee swarm plot is a one-dimensional scatter plot like stripchart, but with closely-packed, non-overlapping points.

This package provides a wrapper for the homologene database by the National Center for Biotechnology Information (NCBI). It allows searching for gene homologs across species. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.

This package contains a set of functions that extend the cancor function. These functions provide new numerical and graphical outputs. It also includes a regularized extension of the canonical correlation analysis to deal with datasets with more variables than observations.

Compute time-dependent ROC curve from censored survival data using Kaplan-Meier (KM) or Nearest Neighbor Estimation (NNE) method of Heagerty, Lumley & Pepe (Biometrics, Vol 56 No 2, 2000, PP 337-344)

This package lets you edit and simplify geojson, Spatial, and sf objects. This is a wrapper around the mapshaper JavaScript library to perform topologically-aware polygon simplification, as well as other operations such as clipping, erasing, dissolving, and converting multi-part to single-part geometries.

Estimate quantile regression (QR) and composite quantile regression (cqr) and with adaptive lasso penalty using interior point (IP), majorize and minimize (MM), coordinate descent (CD), and alternating direction method of multipliers algorithms (ADMM).

This package provides an R interface to the NCBI's EUtils API, allowing users to search databases like GenBank PubMed, process the results of those searches and pull data into their R sessions.

This package creates D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.

This package provides auxiliary functions and data sets for "Ecological Models and Data", a book presenting maximum likelihood estimation and related topics for ecologists (ISBN 978-0-691-12522-0).

This r-acceptancesampling provides functionality for creating and evaluating acceptance sampling plans. Acceptance sampling is a methodology commonly used in quality control and improvement. International standards of acceptance sampling provide sampling plans for specific circumstances. The aim of this package is to provide an easy-to-use interface to visualize single, double or multiple sampling plans. In addition, methods have been provided to enable the user to assess sampling plans against pre-specified levels of performance, as measured by the probability of acceptance for a given level of quality in the lot.

This package provides R bindings to the uchardet encoding detector library from Mozilla. It takes a sequence of bytes in an unknown character encoding without any additional information, and attempts to get the encoding of the text. All return names of the encodings are iconv-compatible.

This package provides plotting functions for posterior analysis, model checking, and MCMC diagnostics. The package is designed not only to provide convenient functionality for users, but also a common set of functions that can be easily used by developers working on a variety of R packages for Bayesian modeling.

This is an R package for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events. DrImpute can improve the performance of such software by imputing dropout events.

Tools for integrating spatially-misaligned GIS datasets. Part of the Sub-National Geospatial Data Archive System.

This package provides UI widget and layout functions for writing Shiny apps that work well on small screens.

This package provides functions for data manipulation, imputing missing values in an approximate Bayesian framework, diagnostics of the models used to generate the imputations, confidence-building mechanisms to validate some of the assumptions of the imputation algorithm, and functions to analyze multiply imputed data sets with the appropriate degree of sampling uncertainty.

This package provides utilities for computation and analysis of correlation/covariation in multiple sequence alignments and in side chain motions during molecular dynamics simulations. Features include the computation of correlation/covariation scores using a variety of scoring functions between either sequence positions in alignments or side chain dihedral angles in molecular dynamics simulations and utilities to analyze the correlation/covariation matrix through a variety of tools including network representation and principal components analysis. In addition, several utility functions are based on the R graphical environment to provide friendly tools for help in data interpretation.

This package offers methods to perform asymptotically bias-corrected regularized linear discriminant analysis (ABC_RLDA) for cost-sensitive binary classification. The bias-correction is an estimate of the bias term added to regularized discriminant analysis that minimizes the overall risk.

The objective of this package is to perform inference using an expressive statistical grammar that coheres with the Tidy design framework.

This is a subset of the original spatstat package, containing the user-level code from spatstat which performs geometrical operations, except for the geometry of linear networks.