Perform pairwise likelihood inference in latent autoregressive count models. See Pedeli and Varin (2020) for details.

Automatic detection of hyperlinks for packages and calls in the text of rmarkdown or quarto documents.

Client for the Office of National Statistics ('ONS') API <https://api.beta.ons.gov.uk/v1>.

This package provides functions to easily convert data to binary formats other programs/machines can understand.

Run lapply() calls in parallel by submitting them to gridengine clusters using the qsub command.

Empirical adjustment of the distribution of variables originating from (regional) climate model simulations using quantile mapping.

Explore synesthesia consistency test data, calculate consistency scores, and classify participant data as valid or invalid.

Datasets used in "Statistical Methods for the Social Sciences" (SMSS) by Alan Agresti and Barbara Finlay.

This package performs the EM algorithm for regression models using Skew Scale Mixtures of Normal Distributions.

This package implements a method for identifying subgroups with superior response relative to the overall sample.

S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.

Functions, Classes & Methods for estimation, prediction, and simulation (bootstrap) of Variable Length Markov Chain ('VLMC') Models.

An extension for the xml2 package to transform XML documents by applying an xslt style-sheet.

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

This package provides a flexible alternative to the built-in rank() function called smartrank(). Optionally rank categorical variables by frequency (instead of in alphabetical order), and control whether ranking is based on descending/ascending order. smartrank() is suitable for both numerical and categorical data.

This package provides estimation and inference procedures for boundary regression discontinuity (RD) designs using local polynomial methods, based on either bivariate coordinates or distance-based approaches. Methods are developed in Cattaneo, Titiunik, and Yu (2025) <https://mdcattaneo.github.io/papers/Cattaneo-Titiunik-Yu_2025_BoundaryRD.pdf>.

Suite of tools for using D3', a library for producing dynamic, interactive data visualizations. Supports translating objects into D3 friendly data structures, rendering D3 scripts, publishing D3 visualizations, incorporating D3 in R Markdown, creating interactive D3 applications with Shiny, and distributing D3 based htmlwidgets in R packages.

This package provides a dependency management toolkit for R. Using renv, you can create and manage project-local R libraries, save the state of these libraries to a lockfile, and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.

An interface to the Open Tree of Life API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to Open Tree identifiers'. The Open Tree of Life aims at assembling a comprehensive phylogenetic tree for all named species.

Plots the Receiver Operating Characteristics Surface for high-throughput class-skewed data, calculates the Volume under the Surface (VUS) and the FDR-Controlled Area Under the Curve (FCAUC), and conducts tests to compare two ROC surfaces. Computes eROC curve and the corresponding AUC for imperfect reference standard.

Utilities to access Integrated Food Security Phase Classification (IPC) and Cadre Harmonisé (CH) food security data. Wrapper functions are available for all of the IPC-CH Public API (<https://docs.api.ipcinfo.org>) simplified and advanced endpoints to easily download the data in a clean and tidy format.

This package provides tools to parse Illumina Sequence Analysis Viewer (SAV) files, access data, and generate QC plots.

This is a package for significance analysis of Microarrays for differential expression analysis, RNAseq data and related problems.

Remake is an enhanced version of GNU Make that adds improved error reporting, better tracing, profiling, and a debugger.