Remake is an enhanced version of GNU Make that adds improved error reporting, better tracing, profiling, and a debugger.

Plots the Receiver Operating Characteristics Surface for high-throughput class-skewed data, calculates the Volume under the Surface (VUS) and the FDR-Controlled Area Under the Curve (FCAUC), and conducts tests to compare two ROC surfaces. Computes eROC curve and the corresponding AUC for imperfect reference standard.

An interface to the Open Tree of Life API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to Open Tree identifiers'. The Open Tree of Life aims at assembling a comprehensive phylogenetic tree for all named species.

Utilities to access Integrated Food Security Phase Classification (IPC) and Cadre Harmonisé (CH) food security data. Wrapper functions are available for all of the IPC-CH Public API (<https://docs.api.ipcinfo.org>) simplified and advanced endpoints to easily download the data in a clean and tidy format.

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

This package provides a dependency management toolkit for R. Using renv, you can create and manage project-local R libraries, save the state of these libraries to a lockfile, and later restore your library as required. Together, these tools can help make your projects more isolated, portable, and reproducible.

Calculates the credit debt for the next period based on the available data using the cross-classification credibility model.

Estimates the ratio of the regression coefficients and the dispersion parameter in conditional generalized linear models for clustered data.

This package provides functions for direct surrogate variable analysis, which can identify hidden factors in high-dimensional biomedical data.

Apache licensed alternative to Highcharter which provides functions for both fast and beautiful interactive visualization for Markdown and Shiny'.

This package provides a small utility which wraps Rscript and provides access to all R functions from the shell.

This package provides a variety of functions to fit linear and nonlinear regression with a large selection of distributions.

The 14th generation International Geomagnetic Reference Field (IGRF). A standard spherical harmonic representation of the Earth's main field.

Collection of functions for quality control (QC) of climatological daily time series (e.g. the ECA&D station data).

Prediction with k* nearest neighbor algorithm based on a publication by Anava and Levy (2016) <arXiv:1701.07266>.

This package provides methods of developing linear time series modelling. Methods are given for loglikelihood computation, forecasting and simulation.

Set of tools for mapping of categorical response variables based on principal component analysis (pca) and multidimensional unfolding (mdu).

The Matthews correlation coefficient (MCC) score is calculated (Matthews BW (1975) <DOI:10.1016/0005-2795(75)90109-9>).

Performing drug response analyses and IC50 estimations using n-Parameter logistic regression. Can also be applied to proliferation analyses.

Design and implementation of Percentile-based Shewhart Control Charts for continuous data. Faraz (2019) <doi:10.1002/qre.2384>.

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

This package provides functions for testing affine hypotheses on the regression coefficient vector in regression models with autocorrelated errors.

This package implements the libyaml YAML 1.1 parser and emitter (http://pyyaml.org/wiki/LibYAML) for R.

This package provides tools for measuring inequality, concentration, and poverty measures. It provides both empirical and theoretical Lorenz curves.