This is a package for Bayesian model averaging and variable selection for linear models, generalized linear models and survival models (cox regression).

This package provides basic infrastructure and some algorithms for the traveling salesperson problem(TSP) (also known as the traveling salesman problem).

This package creates lots of colorful plots in a multitude of variations. Try a demo of the LSD by running demotour().

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

This package provides means to run simulations for adaptive seamless designs with and without early outcomes for treatment selection and subpopulation type designs.

The r-abd package contains data sets and sample code for the Analysis of biological data by Michael Whitlock and Dolph Schluter.

This package provides functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.

This package provides support for linear order and unimodal order (univariate) isotonic regression and bivariate isotonic regression with linear order on both variables.

This package provides an easy to use library to setup, apply and make inference with discrete time and discrete space hidden Markov models.

Redis is an advanced key-value cache and store. Redis supports many data structures including strings, hashes, lists, sets, sorted sets, bitmaps and hyperloglogs.

rdate connects to an RFC 868 time server over a TCP/IP network, printing the returned time and/or setting the system clock.

This package provides functions for 1D and 2D Discrete Cosine Transform (DCT), Discrete Sine Transform (DST) and Discrete Hartley Transform (DHT).

Logistic Factor Analysis (LFA) is a method for a PCA analogue on Binomial data via estimation of latent structure in the natural parameter.

This package supports multiple precision arithmetic (big integers and rationals, prime number tests, matrix computation), "arithmetic without limitations" using the GNU Multiple Precision library.

This package provides functions that wrap popular phylogenetic software for sequence alignment, masking of sequence alignments, and estimation of phylogenies and ancestral character states.

Li-Ri is a game in which you drive a wooden toy steam locomotive across many levels and collect all the coaches to win.

Li-Ri is a game in which you drive a wooden toy steam locomotive across many levels and collect all the coaches to win.

This package supports the analysis of count data exhibiting autoregressive properties, using the Autoregressive Conditional Poisson model (ACP(p,q)) proposed by Heinen (2003).

This package provides tools for Independent Component Analysis (ICA) using various algorithms: FastICA, Information-Maximization (Infomax), and Joint Approximate Diagonalization of Eigenmatrices (JADE).

This package provides cover-tree and kd-tree fast k-nearest neighbor search algorithms. Related applications including KNN classification, regression and information measures are implemented.

This is a package for computation and visualization of the empirical attainment function (EAF) for the analysis of random sets in multi-criterion optimization.

This package processes accelerometer data from uni-axial and tri-axial devices and generates data summaries. Also, includes functions to plot, analyze, and simulate accelerometer data.

This package provides routines for Maximum likelihood, Kalman filtering and smoothing, and Bayesian analysis of Normal linear State Space models, also known as Dynamic Linear Models.

This package predicts the gene-gene interaction network and identifies the direct transcriptional targets of the perturbation using an ODE (Ordinary Differential Equation) based method.