Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.
This package provides an R interface to the C libstemmer library that implements Porter's word stemming algorithm for collapsing words to a common root to aid comparison of vocabulary. Currently supported languages are Danish, Dutch, English, Finnish, French, German, Hungarian, Italian, Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.
This package provides a collection of regular expression tools associated with the qdap package that may be useful outside of the context of discourse analysis. Tools include removal/extraction/replacement of abbreviations, dates, dollar amounts, email addresses, hash tags, numbers, percentages, citations, person tags, phone numbers, times, and zip codes.
This package estimates optimal cutpoints for binary classification metrics. It also validates performance using bootstrapping. Some methods for more robust cutpoint estimation are supported, e.g. a parametric method assuming normal distributions, bootstrapped cutpoints, and smoothing of the metric values per cutpoint using Generalized Additive Models. Various plotting functions are included.
Radiance is a web application environment, which is sort of like a web framework, but more general, more flexible. It should let you write personal websites and generally deployable applications easily and in such a way that they can be used on practically any setup without having to undergo special adaptations.
The rsc package provides a BibTeX style in accordance with the requirements of the Royal Society of Chemistry. It was originally based on the file pccp.bst, but also implements a number of styles from the achemso package. The package is now a stub for the chemstyle.
An enhanced version of the semi-empirical, spatially distributed emission and transport model PhosFate implemented in R and C++'. It is based on the D-infinity, but also supports the D8 flow method. The currently available substances are suspended solids (SS) and particulate phosphorus (PP). A major feature is the allocation of substance loads entering surface waters to their sources of origin, which is a basic requirement for the identification of critical source areas and in consequence a cost-effective implementation of mitigation measures. References: Hepp et al. (2022) <doi:10.1016/j.jenvman.2022.114514>; Hepp and Zessner (2019) <doi:10.3390/w11102161>; Kovacs (2013) <http://hdl.handle.net/20.500.12708/9468>.
Resampling Stats (http://www.resample.com) is an add-in for running randomization tests in Excel worksheets. The workflow is (1) to define a statistic of interest that can be calculated from a data table, (2) to randomize rows ad/or columns of a data table to simulate a null hypothesis and (3) and to score the value of the statistic from many randomizations. The relative frequency distribution of the statistic in the simulations is then used to infer the probability of the observed value be generated by the null process (probability of Type I error). This package intends to translate this logic for R for teaching purposes. Keeping the original workflow is favored over performance.
An integrated set of tools to allow data users to conduct meteorological normalisation and counterfactual modelling for air quality data. The meteorological normalisation technique uses predictive random forest models to remove variation of pollutant concentrations so trends and interventions can be explored in a robust way. For examples, see Grange et al. (2018) <doi:10.5194/acp-18-6223-2018> and Grange and Carslaw (2019) <doi:10.1016/j.scitotenv.2018.10.344>. The random forest models can also be used for counterfactual or business as usual (BAU) modelling by using the models to predict, from the model's perspective, the future. For an example, see Grange et al. (2021) <doi:10.5194/acp-2020-1171>.
This package provides routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE). It includes routines that:
generate gradient and jacobian matrices (full and banded),
find roots of non-linear equations by the Newton-Raphson method,
estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the Newton-Raphson method, or by dynamically running,
solve the steady-state conditions for uni- and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ordinary differential equations by numerical differencing (using the method-of-lines approach).
Clinical trial design for subgroup selection in three-stage group sequential trial as described in Lai, Lavori and Liao (2014, <doi:10.1016/j.cct.2014.09.001>). Includes facilities for design, exploration and analysis of such trials. An implementation of the initial DEFUSE-3 trial is also provided as a vignette.
The functions defined in this program serve for implementing adaptive two-stage tests. Currently, four tests are included: Bauer and Koehne (1994), Lehmacher and Wassmer (1999), Vandemeulebroecke (2006), and the horizontal conditional error function. User-defined tests can also be implemented. Reference: Vandemeulebroecke, An investigation of two-stage tests, Statistica Sinica 2006.
This package provides an integrated data management solution for assets installed via the Biobricks.ai platform. Streamlines the process of loading and interacting with diverse datasets in a consistent manner. A list of bricks is available at <https://status.biobricks.ai>. Documentation for Biobricks.ai is available at <https://docs.biobricks.ai>.
BabyTime is an application for tracking infant and toddler care activities like sleeping, eating, etc. This package will take the outputted .zip files and parse it into a usable list object with cleaned data. It handles malformed and incomplete data gracefully and is designed to parse one directory at a time.
Computes the uniform rate of profit, the vector of price of production and the vector of labor values; and also compute measures of deviation between relative prices of production and relative values. <https://scholarworks.umass.edu/econ_workingpaper/347/>. You provide the input-output data and clptheory does the calculations for you.
Download flight and airport data from Brazilâ s Civil Aviation Agency (ANAC) <https://www.gov.br/anac/pt-br>. The data covers detailed information on aircraft, airports, and airport operations registered with ANAC. It also includes data on airfares, all international flights to and from Brazil, and domestic flights within the country.
An Rstudio addin for version control that allows users to clone repositories, create and delete branches, and sync forks on GitHub, GitLab, etc. Furthermore, the addin uses the GitLab API to allow instructors to create forks and merge requests for all students/teams with one click of a button.
This package provides ggplot2 functions to return the results of seasonal and trading day adjustment made by RJDemetra'. RJDemetra is an R interface around JDemetra+ (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially recommended to the members of the European Statistical System and the European System of Central Banks.
By binding R functions and the Highmaps <https://www.highcharts.com.cn/products/highmaps> chart library, hchinamap package provides a simple way to map China and its provinces. The map of China drawn by this package contains complete Chinese territory, especially the Nine-dotted line, South Tibet, Hong Kong, Macao and Taiwan.
This package provides a simplified version of the IDSL.UFA package to calculate isotopic profiles and adduct formulas from molecular formulas with no dependency on other R packages for online tools and educational mass spectrometry courses. The IDSL.SUFA package also provides an ancillary module to process user-defined adduct formulas.
This package provides a pipeline to annotate a number of peaks from the IDSL.IPA peaklists using an exhaustive chemical enumeration-based approach. This package can perform elemental composition calculations using the following 15 elements : C, B, Br, Cl, K, S, Si, N, H, As, F, I, Na, O, and P.
Collection of tools to automate the processing of data collected though the IDEA4 method (see Zahm et al. (2018) <doi:10.1051/cagri/2019004> ). Starting from the original data collecting files this packages provides functions to compute IDEA indicators, draw modern and aesthetic plots, and produce a wide range of reporting materials.
Computes matching algorithms quickly using Rcpp. Implements the Gale-Shapley Algorithm to compute the stable matching for two-sided markets, such as the stable marriage problem and the college-admissions problem. Implements Irving's Algorithm for the stable roommate problem. Implements the top trading cycle algorithm for the indivisible goods trading problem.
Extract textual data from different media channels through its source based on users choice of keywords. These data can be used to perform text analysis to identify patterns in respective media reporting. The media channels used in this package are print media. The data (or news) used are publicly available to consumers.