r-rnaseqcomp 1.40.0
Propagated dependencies: r-rcolorbrewer@1.1-3
Channel: guix-bioc
Home page: https://github.com/tengmx/rnaseqcomp
Licenses: GPL 3
Build system: r
Synopsis: Benchmarks for RNA-seq Quantification Pipelines
Description:
Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
r-representr 0.1.6
Channel: guix-cran
Licenses: GPL 3
Build system: r
Synopsis: Create Representative Records After Entity Resolution
Description:
An implementation of Kaplan, Betancourt, Steorts (2022) <doi:10.1080/00031305.2022.2041482> that creates representative records for use in downstream tasks after entity resolution is performed. Multiple methods for creating the representative records (data sets) are provided.
r-rapidraker 0.1.3
Dependencies: openjdk@25
Channel: guix-cran
Licenses: Expat
Build system: r
Synopsis: Rapid Automatic Keyword Extraction (RAKE) Algorithm
Description:
This package provides a Java implementation of the RAKE algorithm ('Rose', S., Engel', D., Cramer', N. and Cowley', W. (2010) <doi:10.1002/9780470689646.ch1>), which can be used to extract keywords from documents without any training data.
ruby-sqlite3 1.3.13
Dependencies: sqlite@3.39.3
Propagated dependencies: ruby-mini-portile@2.8.2
Channel: gn-bioinformatics
Licenses: Modified BSD
Build system: ruby
Synopsis: Interface with SQLite3 databases
Description:
This module allows Ruby programs to interface with the SQLite3 database engine.
ruby-chronic 0.10.2
Channel: gn-bioinformatics
Home page: http://github.com/mojombo/chronic
Licenses: Expat
Build system: ruby
Synopsis: Chronic is a natural language date/time parser written in pure Ruby.
Description:
Chronic is a natural language date/time parser written in pure Ruby.
r-illuminaio 0.52.0
Propagated dependencies: r-base64@2.0.2
Channel: guix
Licenses: GPL 2
Build system: r
Synopsis: Parse Illumina microarray output files
Description:
This package provides tools for parsing Illumina's microarray output files, including IDAT.
r-genefilter 1.92.0
Propagated dependencies: r-annotate@1.88.0 r-annotationdbi@1.72.0 r-biobase@2.70.0 r-matrixgenerics@1.22.0 r-survival@3.8-3
Channel: guix
Home page: https://bioconductor.org/packages/genefilter
Licenses: Artistic License 2.0
Build system: r
Synopsis: Filter genes from high-throughput experiments
Description:
This package provides basic functions for filtering genes from high-throughput sequencing experiments.
r-chromunity 0.0.2-2.101e30a
Propagated dependencies: r-arrow@22.0.0 r-biocgenerics@0.56.0 r-bsgenome-hsapiens-ucsc-hg38@1.4.5 r-data-table@1.17.8 r-gchain@0.2.0-2.19f8bb9 r-genomicranges@1.62.0 r-gutils@0.2.0-2.fc24db6 r-igraph@2.2.1 r-magrittr@2.0.4 r-mass@7.3-65 r-matrix@1.7-4 r-pbmcapply@1.5.1 r-plyr@1.8.9 r-r6@2.6.1 r-zoo@1.8-14
Channel: guix
Home page: https://github.com/mskilab/chromunity
Licenses: GPL 3
Build system: r
Synopsis: Discovery of communities in Pore-C concatemers
Description:
This is a package for the discovery of communities in Pore-C concatemers.
r-multidplyr 0.1.4
Propagated dependencies: r-callr@3.7.6 r-cli@3.6.5 r-crayon@1.5.3 r-dplyr@1.1.4 r-magrittr@2.0.4 r-qs2@0.1.6 r-r6@2.6.1 r-rlang@1.1.6 r-tibble@3.3.0 r-tidyselect@1.2.1 r-vctrs@0.6.5
Channel: guix
Home page: https://multidplyr.tidyverse.org
Licenses: Expat
Build system: r
Synopsis: Multi-process dplyr backend
Description:
Partition a data frame across multiple worker processes to provide simple multicore parallelism.
r-scatterpie 0.2.6
Propagated dependencies: r-dplyr@1.1.4 r-ggforce@0.5.0 r-ggfun@0.2.0 r-ggplot2@4.0.1 r-rlang@1.1.6 r-tidyr@1.3.1 r-yulab-utils@0.2.1
Channel: guix
Licenses: Artistic License 2.0
Build system: r
Synopsis: Scatter pie plot
Description:
This package creates scatterpie plots, especially useful for plotting pies on a map.
r-actigraphy 1.4.0
Propagated dependencies: r-fda@6.3.0
Channel: guix
Licenses: ASL 2.0
Build system: r
Synopsis: Actigraphy data analysis
Description:
This package provides tools for functional linear modeling and analysis of actigraphy data.
r-tinylabels 0.2.5
Channel: guix
Home page: https://github.com/mariusbarth/tinylabels
Licenses: Expat
Build system: r
Synopsis: Lightweight variable labels
Description:
This package lets you assign, extract, or remove variable labels from R vectors.
r-browserviz 2.32.0
Channel: guix-bioc
Home page: https://gladkia.github.io/BrowserViz/
Licenses: GPL 2
Build system: r
Synopsis: BrowserViz: interactive R/browser graphics using websockets and JSON
Description:
Interactvive graphics in a web browser from R, using websockets and JSON.
r-chimeraviz 1.36.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsamtools@2.26.0 r-rmarkdown@2.30 r-rgraphviz@2.54.0 r-rcolorbrewer@1.1-3 r-rcircos@1.2.2 r-plyr@1.8.9 r-org-mm-eg-db@3.22.0 r-org-hs-eg-db@3.22.0 r-magick@2.9.0 r-iranges@2.44.0 r-gviz@1.54.0 r-gtools@3.9.5 r-graph@1.88.0 r-genomicranges@1.62.0 r-genomicalignments@1.46.0 r-genomeinfodb@1.46.0 r-ensembldb@2.34.0 r-dt@0.34.0 r-dplyr@1.1.4 r-data-table@1.17.8 r-checkmate@2.3.3 r-biostrings@2.78.0 r-biocstyle@2.38.0 r-annotationfilter@1.34.0 r-annotationdbi@1.72.0
Channel: guix-bioc
Home page: https://github.com/stianlagstad/chimeraviz
Licenses: Artistic License 2.0
Build system: r
Synopsis: Visualization tools for gene fusions
Description:
chimeraviz manages data from fusion gene finders and provides useful visualization tools.
r-chopsticks 1.76.0
Propagated dependencies: r-survival@3.8-3
Channel: guix-bioc
Home page: http://outmodedbonsai.sourceforge.net/
Licenses: GPL 3
Build system: r
Synopsis: The 'snp.matrix' and 'X.snp.matrix' Classes
Description:
This package implements classes and methods for large-scale SNP association studies.
r-maqcsubset 1.48.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/MAQCsubset
Licenses: Artistic License 2.0
Build system: r
Synopsis: Experimental Data Package: MAQCsubset
Description:
Data Package automatically created on Sun Nov 19 15:59:29 2006.
r-macorrplot 1.80.0
Propagated dependencies: r-lattice@0.22-7
Channel: guix-bioc
Licenses: GPL 2+
Build system: r
Synopsis: Visualize artificial correlation in microarray data
Description:
Graphically displays correlation in microarray data that is due to insufficient normalization.
r-pd-pae-g1a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.pae.g1a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name Pae_G1a
Description:
Platform Design Info for The Manufacturer's Name Pae_G1a.
r-pd-hg-u95c 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.hg.u95c
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95C
Description:
Platform Design Info for The Manufacturer's Name HG_U95C.
r-pd-hc-g110 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.hc.g110
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HC_G110
Description:
Platform Design Info for The Manufacturer's Name HC_G110.
r-pd-mg-u74c 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.mg.u74c
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74C
Description:
Platform Design Info for The Manufacturer's Name MG_U74C.
r-pd-hg-u95e 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.hg.u95e
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95E
Description:
Platform Design Info for The Manufacturer's Name HG_U95E.
r-pd-hg-u95a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.hg.u95a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name HG_U95A
Description:
Platform Design Info for The Manufacturer's Name HG_U95A.
r-pd-mg-u74a 3.12.0
Propagated dependencies: r-s4vectors@0.48.0 r-rsqlite@2.4.4 r-oligoclasses@1.72.0 r-oligo@1.74.0 r-iranges@2.44.0 r-dbi@1.2.3 r-biostrings@2.78.0
Channel: guix-bioc
Home page: https://bioconductor.org/packages/pd.mg.u74a
Licenses: Artistic License 2.0
Build system: r
Synopsis: Platform Design Info for The Manufacturer's Name MG_U74A
Description:
Platform Design Info for The Manufacturer's Name MG_U74A.
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