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r-spongebob 0.4.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/jayqi/spongebob
Licenses: Modified BSD
Build system: r
Synopsis: SpongeBob-Case Converter : spOngEboB-CASe CoNVertER
Description:

Convert text (and text in R objects) to Mocking SpongeBob case <https://knowyourmeme.com/memes/mocking-spongebob> and show them off in fun ways. CoNVErT TexT (AnD TeXt In r ObJeCtS) To MOCkINg SpoNgebOb CAsE <https://knowyourmeme.com/memes/mocking-spongebob> aND shOw tHem OFf IN Fun WayS.

r-sensemakr 0.1.6
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/carloscinelli/sensemakr
Licenses: GPL 3
Build system: r
Synopsis: Sensitivity Analysis Tools for Regression Models
Description:

This package implements a suite of sensitivity analysis tools that extends the traditional omitted variable bias framework and makes it easier to understand the impact of omitted variables in regression models, as discussed in Cinelli, C. and Hazlett, C. (2020), "Making Sense of Sensitivity: Extending Omitted Variable Bias." Journal of the Royal Statistical Society, Series B (Statistical Methodology) <doi:10.1111/rssb.12348>.

r-sketching 0.1.2
Propagated dependencies: r-rcpp@1.1.1-1.1 r-phangorn@2.12.1 r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/sokbae/sketching/
Licenses: GPL 3
Build system: r
Synopsis: Sketching of Data via Random Subspace Embeddings
Description:

Construct sketches of data via random subspace embeddings. For more details, see the following papers. Lee, S. and Ng, S. (2022). "Least Squares Estimation Using Sketched Data with Heteroskedastic Errors," Proceedings of the 39th International Conference on Machine Learning (ICML22), 162:12498-12520. Lee, S. and Ng, S. (2020). "An Econometric Perspective on Algorithmic Subsampling," Annual Review of Economics, 12(1): 45â 80.

r-vvtableau 0.9.0
Propagated dependencies: r-xml2@1.5.2 r-xml@3.99-0.23 r-tidyr@1.3.2 r-stringr@1.6.0 r-purrr@1.2.2 r-magrittr@2.0.5 r-jsonlite@2.0.0 r-httr@1.4.8 r-dplyr@1.2.1 r-data-table@1.18.4
Channel: guix-cran
Location: guix-cran/packages/v.scm (guix-cran packages v)
Home page: https://github.com/vusaverse/vvtableau
Licenses: Expat
Build system: r
Synopsis: R Interface for 'Tableau' Services
Description:

This package provides an R interface for interacting with the Tableau Server. It allows users to perform various operations such as publishing workbooks, refreshing data extracts, and managing users using the Tableau REST API (see <https://help.tableau.com/current/api/rest_api/en-us/REST/rest_api_ref.htm> for details). Additionally, it includes functions to perform manipulations on local Tableau workbooks.

r-wswavelet 0.1.0
Propagated dependencies: r-wavethresh@4.7.3
Channel: guix-cran
Location: guix-cran/packages/w.scm (guix-cran packages w)
Home page: https://nilotpalsanyal.github.io/WSwavelet/
Licenses: GPL 2 GPL 3
Build system: r
Synopsis: Bayesian Wavelet Denoising with Wendland-Semicircle Slab Mixture
Description:

Bayesian wavelet denoising using a resolution-adaptive spike-and-slab prior whose continuous slab is a mixture of a compactly supported Wendland-type density and the semicircle density. The package provides Gaussian and Laplace working-likelihood versions, empirical-Bayes fitting of resolution-specific slab weights, robust noise-scale estimation, posterior-mean coefficient shrinkage, reconstruction by the inverse discrete wavelet transform, and diagnostic tools.

r-robincar2 0.2.4
Propagated dependencies: r-survival@3.8-6 r-sandwich@3.1-1 r-numderiv@2016.8-1.1 r-mass@7.3-65 r-checkmate@2.3.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/openpharma/RobinCar2/
Licenses: ASL 2.0
Build system: r
Synopsis: ROBust INference for Covariate Adjustment in Randomized Clinical Trials
Description:

This package performs robust estimation and inference when using covariate adjustment and/or covariate-adaptive randomization in randomized controlled trials. This package is trimmed to reduce the dependencies and validated to be used across industry. See "FDA's final guidance on covariate adjustment"<https://www.regulations.gov/docket/FDA-2019-D-0934>, Tsiatis (2008) <doi:10.1002/sim.3113>, Bugni et al. (2018) <doi:10.1080/01621459.2017.1375934>, Ye, Shao, Yi, and Zhao (2023)<doi:10.1080/01621459.2022.2049278>, Ye, Shao, and Yi (2022)<doi:10.1093/biomet/asab015>, Rosenblum and van der Laan (2010)<doi:10.2202/1557-4679.1138>, Wang et al. (2021)<doi:10.1080/01621459.2021.1981338>, Ye, Bannick, Yi, and Shao (2023)<doi:10.1080/24754269.2023.2205802>, and Bannick, Shao, Liu, Du, Yi, and Ye (2024)<doi:10.48550/arXiv.2306.10213>.

r-ropenblas 0.4.0
Propagated dependencies: r-withr@3.0.2 r-stringr@1.6.0 r-rvest@1.0.5 r-rlang@1.2.0 r-pingr@2.0.5 r-magrittr@2.0.5 r-glue@1.8.1 r-git2r@0.36.2 r-getpass@0.2-4 r-fs@2.1.0 r-cli@3.6.6
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://prdm0.github.io/ropenblas/
Licenses: GPL 3
Build system: r
Synopsis: Download, Compile and Link 'OpenBLAS' Library with R
Description:

The ropenblas package (<https://prdm0.github.io/ropenblas/>) is useful for users of any GNU/Linux distribution. It will be possible to download, compile and link the OpenBLAS library (<https://www.openblas.net/>) with the R language, always by the same procedure, regardless of the GNU/Linux distribution used. With the ropenblas package it is possible to download, compile and link the latest version of the OpenBLAS library even the repositories of the GNU/Linux distribution used do not include the latest versions of OpenBLAS'. If of interest, older versions of the OpenBLAS library may be considered. Linking R with an optimized version of BLAS (<https://netlib.org/blas/>) may improve the computational performance of R code. The OpenBLAS library is an optimized implementation of BLAS that can be easily linked to R with the ropenblas package.

r-bioassayr 1.50.0
Propagated dependencies: r-biocgenerics@0.58.1 r-chemminer@3.64.0 r-dbi@1.3.0 r-matrix@1.7-5 r-rjson@0.2.23 r-rsqlite@3.52.0 r-xml@3.99-0.23
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/girke-lab/bioassayR
Licenses: Artistic License 2.0
Build system: r
Synopsis: Cross-target analysis of small molecule bioactivity
Description:

bioassayR is a computational tool that enables simultaneous analysis of thousands of bioassay experiments performed over a diverse set of compounds and biological targets. Unique features include support for large-scale cross-target analyses of both public and custom bioassays, generation of high throughput screening fingerprints (HTSFPs), and an optional preloaded database that provides access to a substantial portion of publicly available bioactivity data.

r-ggplotify 0.1.3
Propagated dependencies: r-ggplot2@4.0.3 r-gridgraphics@0.5-1 r-rlang@1.2.0 r-yulab-utils@0.2.4
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/GuangchuangYu/ggplotify
Licenses: Artistic License 2.0
Build system: r
Synopsis: Convert plots to @code{grob} or @code{ggplot} object
Description:

This package provides tools to convert plot function calls (using expression or formula) to grob or ggplot objects that are compatible with the grid and ggplot2 environment. With this package, we are able to e.g. use cowplot to align plots produced by base graphics, grid, lattice, vcd etc. by converting them to ggplot objects.

r-progressr 0.19.0
Propagated dependencies: r-digest@0.6.39
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://progressr.futureverse.org
Licenses: GPL 3+
Build system: r
Synopsis: Inclusive, unifying API for progress updates
Description:

This package provides a minimal, unifying API for scripts and packages to report progress updates from anywhere including when using parallel processing. The package is designed such that the developer can to focus on what progress should be reported on without having to worry about how to present it. The end user has full control of how, where, and when to render these progress updates.

r-shinystan 2.7.0
Propagated dependencies: r-bayesplot@1.15.0 r-colourpicker@1.3.0 r-dt@0.34.0 r-dygraphs@1.1.1.6 r-ggplot2@4.0.3 r-gridextra@2.3 r-gtools@3.9.5 r-markdown@2.0 r-reshape2@1.4.5 r-rstan@2.32.7 r-shiny@1.13.0 r-shinyjs@2.1.1 r-shinythemes@1.2.0 r-threejs@0.3.4 r-xtable@1.8-8 r-xts@0.14.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://mc-stan.org/
Licenses: GPL 3+
Build system: r
Synopsis: Interactive visual and numerical analysis for Bayesian models
Description:

This package provides a graphical user interface for interactive Markov chain Monte Carlo (MCMC) diagnostics and plots and tables helpful for analyzing a posterior sample. The interface is powered by the Shiny web application framework and works with the output of MCMC programs written in any programming language (and has extended functionality for Stan models fit using the rstan and rstanarm packages).

r-muleadata 1.8.0
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://github.com/ELTEbioinformatics/muleaData
Licenses: Expat
Build system: r
Synopsis: Genes Sets for Functional Enrichment Analysis with the 'mulea' R Package
Description:

ExperimentHubData package for the mulea comprehensive overrepresentation and functional enrichment analyser R package. Here we provide ontologies (gene sets) in a data.frame for 27 different organisms, ranging from Escherichia coli to human, all acquired from publicly available data sources. Each ontology is provided with multiple gene and protein identifiers. Please see the NEWS file for a list of changes in each version.

r-phantasus 1.32.0
Propagated dependencies: r-yaml@2.3.12 r-xml@3.99-0.23 r-svglite@2.2.2 r-stringr@1.6.0 r-scales@1.4.0 r-rhdf5client@1.34.2 r-rhdf5@2.56.0 r-protolite@2.4.0 r-pheatmap@1.0.13 r-phantasuslite@1.10.0 r-opencpu@2.2.14 r-matrix@1.7-5 r-limma@3.68.3 r-jsonlite@2.0.0 r-httr@1.4.8 r-httpuv@1.6.17 r-htmltools@0.5.9 r-gtable@0.3.6 r-ggplot2@4.0.3 r-geoquery@2.80.0 r-fs@2.1.0 r-fgsea@1.38.0 r-edger@4.10.0 r-deseq2@1.52.0 r-data-table@1.18.4 r-curl@7.1.0 r-config@0.3.2 r-ccapp@0.3.6 r-biobase@2.72.0 r-assertthat@0.2.1 r-apeglm@1.34.0 r-annotationdbi@1.74.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://alserglab.wustl.edu/phantasus
Licenses: Expat
Build system: r
Synopsis: Visual and interactive gene expression analysis
Description:

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

r-asympdiag 0.3.3
Propagated dependencies: r-cli@3.6.6
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/Alvaro-Kothe/asympDiag
Licenses: Expat
Build system: r
Synopsis: Diagnostic Tools for Asymptotic Theory
Description:

Leveraging Monte Carlo simulations, this package provides tools for diagnosing regression models. It implements a parametric bootstrap framework to compute statistics, generates diagnostic envelopes to assess goodness-of-fit, and evaluates type I error control for Wald tests. By simulating data under the assumption that the model is true, it helps to identify model mis-specifications and enhances the reliability of the model inferences.

r-bfbin2arm 0.1.6
Propagated dependencies: r-vgam@1.1-14 r-statmod@1.5.2 r-rlang@1.2.0 r-patchwork@1.3.2 r-ggplot2@4.0.3 r-dplyr@1.2.1
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://rikokelter.github.io/bfbin2arm/
Licenses: GPL 3
Build system: r
Synopsis: Bayes Factor Design for Two-Arm Binomial Trials
Description:

Design and analysis of one- and two-stage binomial clinical phase II trials using Bayes factors. Implements Bayes factors for point-null and directional hypotheses, predictive densities under different hypotheses, and power and sample size calibration. Both one-arm trials with only a single treatment arm and two-arm trials with treatment and control arm are implemented for the one- and two-stage designs.

r-bingroup2 1.3.4
Propagated dependencies: r-scales@1.4.0 r-rdpack@2.6.6 r-rcpparmadillo@15.2.6-1 r-rcpp@1.1.1-1.1 r-rbeta2009@1.0.1 r-partitions@1.10-9 r-ggplot2@4.0.3
Channel: guix-cran
Location: guix-cran/packages/b.scm (guix-cran packages b)
Home page: https://github.com/bdhitt/binGroup2
Licenses: GPL 3+
Build system: r
Synopsis: Identification and Estimation using Group Testing
Description:

This package provides methods for the group testing identification problem: 1) Operating characteristics (e.g., expected number of tests) for commonly used hierarchical and array-based algorithms, and 2) Optimal testing configurations for these same algorithms. Methods for the group testing estimation problem: 1) Estimation and inference procedures for an overall prevalence, and 2) Regression modeling for commonly used hierarchical and array-based algorithms.

r-cmrdesign 0.1.0
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://juancyamin.github.io/cmrdesign/
Licenses: Expat
Build system: r
Synopsis: Conditional Minimax Regret Design Rules
Description:

This package implements Conditional Minimax Regret design rules for pilot-informed experimental assignment, as proposed in Yamin (2026) <doi:10.48550/arXiv.2607.16982>. Includes two-arm, unbounded two-arm, multi-arm, stratified, multiple-outcome, proxy-outcome, and pilot-planning tools. Variance bounds include Maurer and Pontil (2009) <doi:10.48550/arXiv.0907.3740> empirical-Bernstein bounds and exact Bernoulli confidence bounds.

r-childfree 0.0.6
Propagated dependencies: r-rio@1.3.0 r-rcurl@1.98-1.18
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://thechildfree.org/
Licenses: GPL 3
Build system: r
Synopsis: Access and Harmonize Childfree Demographic Data
Description:

Reads demographic data from a variety of public data sources, extracting and harmonizing variables useful for the study of childfree individuals. The identification of childfree individuals and those with other family statuses uses Neal & Neal's (2024) "A Framework for Studying Adults who Neither have Nor Want Children" <doi:10.1177/10664807231198869>; A pre-print is available at <doi:10.31234/osf.io/fa89m>.

r-drhutools 1.1.1
Propagated dependencies: r-webshot@0.5.5 r-sp@2.2-1 r-sf@1.1-1 r-purrr@1.2.2 r-png@0.1-9 r-magick@2.9.1 r-leaflet@2.2.3 r-jsonlite@2.0.0 r-htmlwidgets@1.6.4 r-htmltools@0.5.9 r-ggplot2@4.0.3 r-gganimate@1.0.11 r-dplyr@1.2.1 r-animation@2.8
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://www.drhuyue.site/software/drhutools/
Licenses: GPL 3+
Build system: r
Synopsis: Political Science Academic Research Gears
Description:

Using these tools to simplify the research process of political science and other social sciences. The current version can create folder system for academic project in political science, calculate psychological trait scores, visualize experimental and spatial data, set up color-blind palette, and test for Type I error (false positives) in Qualitative Comparative Analysis (QCA) for crisp-set, multi-value, and fuzzy-set variants.

r-edfreader 1.2.1
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://cran.r-project.org/package=edfReader
Licenses: GPL 3
Build system: r
Synopsis: Reading EDF(+) and BDF(+) Files
Description:

Reads European Data Format files EDF and EDF+, see <http://www.edfplus.info>, BioSemi Data Format files BDF, see <http://www.biosemi.com/faq/file_format.htm>, and BDF+ files, see <http://www.teuniz.net/edfbrowser/bdfplus%20format%20description.html>. The files are read in two steps: first the header is read and then the signals (using the header object as a parameter).

r-easytable 2.1.1
Propagated dependencies: r-magrittr@2.0.5 r-flextable@0.9.11 r-dplyr@1.2.1
Channel: guix-cran
Location: guix-cran/packages/e.scm (guix-cran packages e)
Home page: https://github.com/alfredo-hs/easytable
Licenses: Expat
Build system: r
Synopsis: Create Multi-Format Regression Tables
Description:

Create publication-ready regression tables in multiple formats, including Word', HTML', LaTeX', and PDF', from statistical models. Supports lm() and glm() models. Includes options for marginal effects, control variable grouping, and robust standard errors using methods described in Zeileis (2004) <doi:10.18637/jss.v011.i10>. Tables can be exported to Word via flextable or to LaTeX for PDF output.

r-flexvarjm 0.1.0
Propagated dependencies: r-survminer@0.5.2 r-survival@3.8-6 r-rcpparmadillo@15.2.6-1 r-rcpp@1.1.1-1.1 r-randtoolbox@2.0.5 r-mvtnorm@1.3-7 r-marqlevalg@2.0.8 r-lcmm@2.2.2 r-ggplot2@4.0.3
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://github.com/LeonieCourcoul/FlexVarJM
Licenses: GPL 3+
Build system: r
Synopsis: Estimate Joint Models with Subject-Specific Variance
Description:

Estimation of mixed models including a subject-specific variance which can be time and covariate dependent. In the joint model framework, the package handles left truncation and allows a flexible dependence structure between the competing events and the longitudinal marker. The estimation is performed under the frequentist framework, using the Marquardt-Levenberg algorithm. (Courcoul, Tzourio, Woodward, Barbieri, Jacqmin-Gadda (2023) <arXiv:2306.16785>).

r-gtbasedim 1.0.0
Propagated dependencies: r-rweka@0.4-50 r-coopgame@0.2.2
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://cran.r-project.org/package=GTbasedIM
Licenses: GPL 2
Build system: r
Synopsis: Game Theory-Based Influence Measures
Description:

Understanding how features influence a specific response variable becomes crucial in classification problems, with applications ranging from medical diagnosis to customer behavior analysis. This packages provides tools to compute such an influence measure grounded on game theory concepts. In particular, the influence measures presented in Davila-Pena, Saavedra-Nieves, and Casas-Méndez (2024) <doi:10.48550/arXiv.2408.02481> can be obtained.

r-morsetktd 0.1.3
Propagated dependencies: r-zoo@1.8-15 r-testthat@3.3.2 r-stanheaders@2.32.10 r-rstantools@2.6.0 r-rstan@2.32.7 r-rcppparallel@5.1.11-2 r-rcppeigen@0.3.4.0.2 r-rcpp@1.1.1-1.1 r-gridextra@2.3 r-ggplot2@4.0.3 r-desolve@1.42 r-bh@1.90.0-1
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=morseTKTD
Licenses: AGPL 3+
Build system: r
Synopsis: Bayesian Inference of TKTD Models
Description:

Advanced methods for a valuable quantitative environmental risk assessment using Bayesian inference of survival Data with toxicokinetics toxicodynamics (TKTD) models. Among others, it facilitates Bayesian inference of the general unified threshold model of survival (GUTS). See models description in Jager et al. (2011) <doi:10.1021/es103092a> and implementation using Bayesian inference in Baudrot and Charles (2019) <doi:10.1038/s41598-019-47698-0>.

Total packages: 32857