An interactive Shiny application to perform fast parameter inference on dynamical systems (described by ordinary differential equations) using gradient matching. Please see the project page for more details.

Data filtering module for teal applications. Allows for interactive filtering of data stored in data.frame and MultiAssayExperiment objects. Also displays filtered and unfiltered observation counts.

Interface to TensorFlow Datasets, a high-level library for building complex input pipelines from simple, re-usable pieces. See <https://www.tensorflow.org/guide> for additional details.

Tabu search algorithm for binary configurations. A basic version of the algorithm as described by Fouskakis and Draper (2007) <doi:10.1111/j.1751-5823.2002.tb00174.x>.

This package provides a set of custom R Markdown templates for documents and presentations with the University of Illinois at Urbana-Champaign (UIUC) color scheme and identity standards.

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

This package provides a collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.

This package provides a small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode.

The ammeter gem makes it easy to write specs for Rails generators. An existing user is rspec-rails, which uses ammeter to spec its own generators.

Promise is a Ruby implementation of the Promises/A+ specification. It provides 100% mutation coverage, tested on MRI 1.9, 2.0, 2.1, 2.2, Rubinius, and JRuby.

SurveyCTO is a platform for mobile data collection in offline settings. The rsurveycto R package uses the SurveyCTO REST API <https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html> to read datasets and forms from a SurveyCTO server into R as data.table's and to download file attachments. The package also has limited support to write datasets to a server.

Rank-hazard plots Karvanen and Harrell (2009) <DOI:10.1002/sim.3591> visualize the relative importance of covariates in a proportional hazards model. The key idea is to rank the covariate values and plot the relative hazard as a function of ranks scaled to interval [0,1]. The relative hazard is plotted in respect to the reference hazard, which can bee.g. the hazard related to the median of the covariate.

Modeling and plotting functions for Reliability Growth Analysis (RGA). Models include the Duane (1962) <doi:10.1109/TA.1964.4319640>, Non-Homogeneous Poisson Process (NHPP) by Crow (1975) <https://apps.dtic.mil/sti/citations/ADA020296>, Piecewise Weibull NHPP by Guo et al. (2010) <doi:10.1109/RAMS.2010.5448029>, and Piecewise Weibull NHPP with Change Point Detection based on the segmented package by Muggeo (2024) <https://cran.r-project.org/package=segmented>.

Facilitates plotting audiometric data (mostly) by preparing the coordinate system according to standards, given e. g. in American Speech-Language-Hearing Association (2005), <doi:10.1044/policy.GL2005-00014>.

Bootstraps and imputes incomplete datasets. Then performs inference on estimates obtained from analysing the imputed datasets as proposed by von Hippel and Bartlett (2021) <doi:10.1214/20-STS793>.

Several causal effects are measured using least squares regressions and basis function approximations. Backward and forward selection methods based on different criteria are used to select the basis functions.

What is funnier than a dad joke? A dad joke in R! This package utilizes the API for <https://icanhazdadjoke.com> and returns dad jokes from several API endpoints.

Set of tools for detecting and analyzing Airborne Laser Scanning-derived Tropical Forest Canopy Gaps. Details were published in Silva and others (2019) <doi:10.1111/2041-210X.13211>.

This package contains ten datasets used in the chapters and exercises of Paul, Alice (2023) "Health Data Science in R" <https://alicepaul.github.io/health-data-science-using-r/>.

This package provides a way to display word clouds in R. The word cloud is a html widget, so you can use it in interactive documents and shiny applications.

Allows an interactive assessment of the timing of interim analyses. The algorithm simulates both the recruitment and treatment/event phase of a clinical trial based on the package interim'.

Calculates and plots Handedness index (HI), absolute HI, mean HI and z-score which are commonly used indexes for the study of hand preference (laterality) in non-human primates.

Fully parametric Bayesian multiple imputation framework for massive multivariate data of different variable types as seen in Demirtas, H. (2017) <doi:10.1007/978-981-10-3307-0_8>.

Property based testing, inspired by the original QuickCheck'. This package builds on the property based testing framework provided by hedgehog and is designed to seamlessly integrate with testthat'.