For a multivariate dataset with independent Poisson measurement error, calculates principal components of transformed latent Poisson means. T. Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.

An interactive Shiny application to perform fast parameter inference on dynamical systems (described by ordinary differential equations) using gradient matching. Please see the project page for more details.

This package provides an XY pad input for the Shiny framework. An XY pad is like a bivariate slider. It allows to pick up a pair of numbers.

Interface to TensorFlow Datasets, a high-level library for building complex input pipelines from simple, re-usable pieces. See <https://www.tensorflow.org/guide> for additional details.

Tabu search algorithm for binary configurations. A basic version of the algorithm as described by Fouskakis and Draper (2007) <doi:10.1111/j.1751-5823.2002.tb00174.x>.

Data filtering module for teal applications. Allows for interactive filtering of data stored in data.frame and MultiAssayExperiment objects. Also displays filtered and unfiltered observation counts.

This package provides a set of custom R Markdown templates for documents and presentations with the University of Illinois at Urbana-Champaign (UIUC) color scheme and identity standards.

Rank-hazard plots Karvanen and Harrell (2009) <DOI:10.1002/sim.3591> visualize the relative importance of covariates in a proportional hazards model. The key idea is to rank the covariate values and plot the relative hazard as a function of ranks scaled to interval [0,1]. The relative hazard is plotted in respect to the reference hazard, which can bee.g. the hazard related to the median of the covariate.

SurveyCTO is a platform for mobile data collection in offline settings. The rsurveycto R package uses the SurveyCTO REST API <https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html> to read datasets and forms from a SurveyCTO server into R as data.table's and to download file attachments. The package also has limited support to write datasets to a server.

Studies of resilience in older adults employ a single-arm design where everyone experiences the stressor. The simplistic approach of regressing change versus baseline yields biased estimates due to regression-to-the-mean. This package provides a method to correct the bias. It also allows covariates to be included. The method implemented in the package is described in Varadhan, R., Zhu, J., and Bandeen-Roche, K (2024), Biostatistics 25(4): 1094-1111.

MessagePack is a binary-based efficient object serialization library. It enables to exchange structured objects between many languages like JSON. But unlike JSON, it is very fast and small.

This is a tool for human B-cell context-specific transcriptional regulatory network. In addition, this package provides a human normal B-cells dataset for the examples in package viper.

This package implements methods to project single-cell RNA-seq data onto a reference atlas, enabling interpretation of unknown cell transcriptomic states in the the context of known, reference states.

This package provides a collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in spdep.

Markaby allows writing HTML packages in pure Ruby. This is similar to the functionality provided by ERB, but without the mixture of HTML and additional ERB syntax.

This library provides methods to encode and decode Ascii85 binary-to-text encoding. The main modern use of Ascii85 is in PostScript and Portable Document Format (PDF) file formats.

pay-respects provides a shell helper to suggest correction for mistyped commands, with guix locate integration and an alias (default to f) to correct the previous command.

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

Facilitates plotting audiometric data (mostly) by preparing the coordinate system according to standards, given e. g. in American Speech-Language-Hearing Association (2005), <doi:10.1044/policy.GL2005-00014>.

Bootstraps and imputes incomplete datasets. Then performs inference on estimates obtained from analysing the imputed datasets as proposed by von Hippel and Bartlett (2021) <doi:10.1214/20-STS793>.

Several causal effects are measured using least squares regressions and basis function approximations. Backward and forward selection methods based on different criteria are used to select the basis functions.

What is funnier than a dad joke? A dad joke in R! This package utilizes the API for <https://icanhazdadjoke.com> and returns dad jokes from several API endpoints.

Set of tools for detecting and analyzing Airborne Laser Scanning-derived Tropical Forest Canopy Gaps. Details were published in Silva and others (2019) <doi:10.1111/2041-210X.13211>.

This package implements three nonparametric two-sample tests for multivariate paired data and pair matching. Methods are described in the associated preprint: <doi:10.48550/arXiv.2007.01497>.