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r-gtfsrouter 0.1.4
Propagated dependencies: r-rcpp@1.0.14 r-geodist@0.1.1 r-fs@1.6.6 r-data-table@1.17.4 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://github.com/UrbanAnalyst/gtfsrouter
Licenses: GPL 3
Synopsis: Routing with 'GTFS' (General Transit Feed Specification) Data
Description:

Use GTFS (General Transit Feed Specification) data for routing from nominated start and end stations, for extracting isochrones', and travel times from any nominated start station to all other stations.

r-hildareadr 0.2.0
Propagated dependencies: r-haven@2.5.5 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: https://cran.r-project.org/package=hildareadR
Licenses: GPL 2
Synopsis: Extract Variables from HILDA
Description:

Makes it easy to extract and combine variables from the HILDA (Household, Income and Labour Dynamics in Australia) survey maintained by the Melbourne Institute <https://melbourneinstitute.unimelb.edu.au/hilda>.

r-icesdatras 1.4.1
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://datras.ices.dk/WebServices/Webservices.aspx
Licenses: GPL 2+
Synopsis: DATRAS Trawl Survey Database Web Services
Description:

R interface to access the web services of the ICES (International Council for the Exploration of the Sea) DATRAS trawl survey database <https://datras.ices.dk/WebServices/Webservices.aspx>.

r-moderndive 0.7.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-stringr@1.5.1 r-rlang@1.1.6 r-purrr@1.0.4 r-magrittr@2.0.3 r-knitr@1.50 r-janitor@2.2.1 r-infer@1.0.8 r-glue@1.8.0 r-ggplot2@3.5.2 r-formula-tools@1.7.1 r-dplyr@1.1.4 r-broom@1.0.8
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://moderndive.github.io/moderndive/
Licenses: GPL 3
Synopsis: Tidyverse-Friendly Introductory Linear Regression
Description:

Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.

r-metarnaseq 1.0.8
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=metaRNASeq
Licenses: GPL 2+ GPL 3+
Synopsis: Meta-Analysis of RNA-Seq Data
Description:

Implementation of two p-value combination techniques (inverse normal and Fisher methods). A vignette is provided to explain how to perform a meta-analysis from two independent RNA-seq experiments.

r-monashtipr 0.1.0
Propagated dependencies: r-xml2@1.3.8 r-rvest@1.0.4 r-rlang@1.1.6 r-purrr@1.0.4 r-magrittr@2.0.3 r-lifecycle@1.0.4 r-httr@1.4.7 r-glue@1.8.0
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://jimmyday12.github.io/monash_tipr/
Licenses: Expat
Synopsis: An R API Wrapper for the Monash University Probabilistic Footy Tipping Competition
Description:

An API wrapper for the Monash University Probabilistic Footy Tipping Competition <https://probabilistic-footy.monash.edu/~footy/index.shtml>. Allows users to submit tips directly to the competition from R.

r-nameneedle 1.2.8
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: http://oompa.r-forge.r-project.org/
Licenses: ASL 2.0
Synopsis: Using Needleman-Wunsch to Match Sample Names
Description:

The Needleman-Wunsch global alignment algorithm can be used to find approximate matches between sample names in different data sets. See Wang et al. (2010) <doi:10.4137/CIN.S5613>.

r-piecemaker 1.0.2
Propagated dependencies: r-stringr@1.5.1 r-stringi@1.8.7 r-rlang@1.1.6 r-glue@1.8.0 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/macmillancontentscience/piecemaker
Licenses: FSDG-compatible
Synopsis: Tools for Preparing Text for Tokenizers
Description:

Tokenizers break text into pieces that are more usable by machine learning models. Many tokenizers share some preparation steps. This package provides those shared steps, along with a simple tokenizer.

r-poisnonnor 1.6.3
Propagated dependencies: r-matrix@1.7-3 r-mass@7.3-65 r-corpcor@1.6.10 r-bb@2019.10-1
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PoisNonNor
Licenses: GPL 2 GPL 3
Synopsis: Simultaneous Generation of Count and Continuous Data
Description:

Generation of count (assuming Poisson distribution) and continuous data (using Fleishman polynomials) simultaneously. The details of the method are explained in Demirtas et al. (2012) <DOI:10.1002/sim.5362>.

r-scriptname 1.0.1
Propagated dependencies: r-rlang@1.1.6 r-purrr@1.0.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/MullinsLab/scriptName
Licenses: Expat
Synopsis: Determine a Script's Filename from Within the Script Itself
Description:

This package provides a small set of functions wrapping up the call stack and command line inspection needed to determine a running script's filename from within the script itself.

r-sdtmchecks 1.0.0
Propagated dependencies: r-tidyselect@1.2.1 r-openxlsx@4.2.8 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://pharmaverse.github.io/sdtmchecks/
Licenses: FSDG-compatible
Synopsis: Data Quality Checks for Study Data Tabulation Model (SDTM) Datasets
Description:

This package provides a series of checks to identify common issues in Study Data Tabulation Model (SDTM) datasets. These checks are intended to be generalizable, actionable, and meaningful for analysis.

r-socialmixr 0.4.0
Propagated dependencies: r-xml2@1.3.8 r-wpp2017@1.2-3 r-oai@0.4.0 r-memoise@2.0.1 r-lubridate@1.9.4 r-jsonlite@2.0.0 r-httr@1.4.7 r-data-table@1.17.4 r-curl@6.2.3 r-countrycode@1.6.1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/epiforecasts/socialmixr
Licenses: Expat
Synopsis: Social Mixing Matrices for Infectious Disease Modelling
Description:

This package provides methods for sampling contact matrices from diary data for use in infectious disease modelling, as discussed in Mossong et al. (2008) <doi:10.1371/journal.pmed.0050074>.

r-tracheider 0.1.1
Propagated dependencies: r-tgram@0.2-4
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://cran.r-project.org/package=tracheideR
Licenses: GPL 2+
Synopsis: Standardize Tracheidograms
Description:

This package contains functions to standardize tracheid profiles using the traditional method (Vaganov) and a new method to standardize tracheidograms based on the relative position of tracheids within tree rings.

r-toothnroll 1.11
Propagated dependencies: r-vegan@2.6-10 r-stringr@1.5.1 r-rvcg@0.25 r-rgl@1.3.18 r-oce@1.8-3 r-morphomap@1.5 r-morpho@2.12 r-mgcv@1.9-3 r-lattice@0.22-7 r-geometry@0.5.2 r-desctools@0.99.60 r-compositions@2.0-8 r-colorramps@2.3.4 r-arothron@2.0.5 r-alphashape3d@1.3.2
Channel: guix-cran
Location: guix-cran/packages/t.scm (guix-cran packages t)
Home page: https://cran.r-project.org/package=Toothnroll
Licenses: GPL 2
Synopsis: Dental Tissues Landmarking Measuring and Mapping
Description:

Two- and three-dimensional morphometric maps of enamel and dentine thickness and multivariate analysis. Volume calculation of dental materials. Principal component analysis of thickness maps with associated morphometric map variations.

r-seqpattern 1.40.0
Propagated dependencies: r-biostrings@2.76.0 r-genomicranges@1.60.0 r-iranges@2.42.0 r-kernsmooth@2.23-26 r-plotrix@3.8-4
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/seqPattern
Licenses: GPL 3+
Synopsis: Visualising oligonucleotide patterns and motif occurrences
Description:

This package provides tools to visualize oligonucleotide patterns and sequence motif occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.

r-polychrome 1.5.4
Propagated dependencies: r-colorspace@2.1-1 r-scatterplot3d@0.3-44
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://oompa.r-forge.r-project.org/
Licenses: ASL 2.0
Synopsis: Qualitative palettes with many colors
Description:

This package provides tools for creating, viewing, and assessing qualitative palettes with many (20-30 or more) colors. See Coombes and colleagues (2019) https://doi:10.18637/jss.v090.c01.

r-ggalluvial 0.12.5
Propagated dependencies: r-dplyr@1.1.4 r-ggplot2@3.5.2 r-lazyeval@0.2.2 r-rlang@1.1.6 r-tidyr@1.3.1 r-tidyselect@1.2.1
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://corybrunson.github.io/ggalluvial/
Licenses: GPL 3
Synopsis: Alluvial plots for ggplot2
Description:

This package provides alluvial plots for ggplot2. Alluvial plots use variable-width ribbons and stacked bar plots to represent multi-dimensional or repeated-measures data with categorical or ordinal variables.

r-ggbeeswarm 0.7.2
Propagated dependencies: r-beeswarm@0.4.0 r-cli@3.6.5 r-ggplot2@3.5.2 r-lifecycle@1.0.4 r-vipor@0.4.7
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/eclarke/ggbeeswarm
Licenses: GPL 2+
Synopsis: Categorical scatter (violin point) plots
Description:

This package provides two methods of plotting categorical scatter plots such that the arrangement of points within a category reflects the density of data at that region, and avoids over-plotting.

ruby-net-ssh 7.1.0
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/net-ssh/net-ssh
Licenses: Expat
Synopsis: Ruby implementation of the SSH2 client protocol
Description:

Net::SSH is a pure-Ruby implementation of the SSH2 client protocol. It allows you to write programs that invoke and interact with processes on remote servers, via SSH2.

ruby-launchy 2.5.2
Propagated dependencies: ruby-addressable@2.8.1
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/copiousfreetime/launchy
Licenses: ISC
Synopsis: Ruby helper class for launching applications
Description:

Launchy is helper class for launching applications in a fire and forget manner. The aim of Launchy is to provide a common approach to launching external applications from within Ruby programs.

r-ridgetorus 1.0.2
Propagated dependencies: r-sphunif@1.4.0 r-sdetorus@0.1.10 r-rootsolve@1.8.2.4 r-rcpparmadillo@14.4.3-1 r-rcpp@1.0.14 r-circular@0.5-1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/egarpor/ridgetorus
Licenses: GPL 3
Synopsis: PCA on the Torus via Density Ridges
Description:

Implementation of a Principal Component Analysis (PCA) in the torus via density ridge estimation. The main function, ridge_pca(), obtains the relevant density ridge for bivariate sine von Mises and bivariate wrapped Cauchy distribution models and provides the associated scores and variance decomposition. Auxiliary functions for evaluating, fitting, and sampling these models are also provided. The package provides replicability to Garcà a-Portugués and Prieto-Tirado (2023) <doi:10.1007/s11222-023-10273-9>.

r-rhoneycomb 2.3.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rhoneycomb
Licenses: GPL 2+
Synopsis: Analysis of Honeycomb Selection Designs
Description:

This package provides a useful statistical tool for the construction and analysis of Honeycomb Selection Designs. More information about this type of designs: Fasoula V. (2013) <doi:10.1002/9781118497869.ch6> Fasoula V.A., and Tokatlidis I.S. (2012) <doi:10.1007/s13593-011-0034-0> Fasoulas A.C., and Fasoula V.A. (1995) <doi:10.1002/9780470650059.ch3> Tokatlidis I. (2016) <doi:10.1017/S0014479715000150> Tokatlidis I., and Vlachostergios D. (2016) <doi:10.3390/d8040029>.

r-anim-plots 0.2.3
Propagated dependencies: r-animation@2.7
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/hughjonesd/anim.plots
Licenses: GPL 2
Synopsis: Simple Animated Plots for R
Description:

Simple animated versions of basic R plots, using the animation package. Includes animated versions of plot, barplot, persp, contour, filled.contour, hist, curve, points, lines, text, symbols, segments, and arrows.

r-clustervar 0.0.8
Propagated dependencies: r-scales@1.4.0 r-parabar@1.4.2 r-mvtnorm@1.3-3 r-mass@7.3-65 r-iterators@1.0.14 r-foreach@1.5.2 r-fastdummies@1.7.5 r-doparallel@1.0.17
Channel: guix-cran
Location: guix-cran/packages/c.scm (guix-cran packages c)
Home page: https://cran.r-project.org/package=ClusterVAR
Licenses: GPL 2
Synopsis: Fitting Latent Class Vector-Autoregressive (VAR) Models
Description:

Estimates latent class vector-autoregressive models via EM algorithm on time-series data for model-based clustering and classification. Includes model selection criteria for selecting the number of lags and clusters.

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