The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

This package provides a summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).

Generalization of the Bayesian classification and regression tree model that partitions subjects into terminal nodes and tailors predictive model to each terminal node.

Fast Bayesian inference of marginal and conditional independence structures from high-dimensional data. Leday and Richardson (2019), Biometrics, <doi:10.1111/biom.13064>.

Retorna detalhes de dados de CEPs brasileiros, bairros, logradouros e tal. (Returns info of Brazilian postal codes, city names, addresses and so on.).

Statistical tools for environmental and ecological surveys. Simulation-based power and precision analysis; detection probabilities from different survey designs; visual fast count estimation.

API wrapper to download statistical information from the Economic Statistics System (ECOS) of the Bank of Korea <https://ecos.bok.or.kr/api/#/>.

We implement the Fast Covariance Estimation for Sparse Functional Data paper published in Statistics and Computing <doi: 10.1007/s11222-017-9744-8>.

Full descriptive statistics, physical description of sediment, metric or phi sieves. Includes a Shiny web application for interactive grain size analysis and visualization.

Fits latent space models for single networks and hierarchical latent space models for ensembles of networks as described in Sweet, Thomas & Junker (2013).

HAR files are generated and consumed by GEMPACK applications. This package reads/writes HAR files (and SL4 files) directly using basic R functions.

This package provides functions and datasets from Hilbe, J.M., and Robinson, A.P. 2013. Methods of Statistical Model Estimation. Chapman & Hall / CRC.

This package provides the Arctic Ice Studio's Nord and Group of Seven inspired colour palettes for use with ggplot2 via custom functions.

This package provides tools to download and merge data files on sub-national conflict, violence and protests from <http://www.x-sub.org>.

R-based access to mass-spectrometry (MS) data. While many packages exist to process MS data, many of these make it difficult to access the underlying mass-to-charge ratio (m/z), intensity, and retention time of the files themselves. This package is designed to format MS data in a tidy fashion and allows the user perform the plotting and analysis.

This package contains the function run.eqs() which calls an EQS script file, executes the EQS estimation, and, finally, imports the results as R objects. These two steps can be performed separately: call.eqs() calls and executes EQS, whereas read.eqs() imports existing EQS outputs as objects into R. It requires EQS 6.2 (build 98 or higher).

Robust tail dependence estimation for bivariate models. This package is based on two papers by the authors:'Robust and bias-corrected estimation of the coefficient of tail dependence and Robust and bias-corrected estimation of probabilities of extreme failure sets'. This work was supported by a research grant (VKR023480) from VILLUM FONDEN and an international project for scientific cooperation (PICS-6416).

Machine learning-based tools to predict DNA methylation of locus-specific repetitive elements (RE) by learning surrounding genetic and epigenetic information. These tools provide genomewide and single-base resolution of DNA methylation prediction on RE that are difficult to measure using array-based or sequencing-based platforms, which enables epigenome-wide association study (EWAS) and differentially methylated region (DMR) analysis on RE.

Show physics, math and engineering students how an ODE solver is made and how effective R classes can be for the construction of the equations that describe natural phenomena. Inspiration for this work comes from the book on "Computer Simulations in Physics" by Harvey Gould, Jan Tobochnik, and Wolfgang Christian. Book link: <http://www.compadre.org/osp/items/detail.cfm?ID=7375>.

This package is an R package that offers models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

This package provides conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

Raider is a simple shredding program built for GNOME. Also known as File Shredder, it uses the GNU Core Utility called shred to securely delete files.

Roffit is a program that reads an nroff file and outputs an HTML file. It is typically used to display man pages on a web site.

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.