This package provides the Arctic Ice Studio's Nord and Group of Seven inspired colour palettes for use with ggplot2 via custom functions.

Simultaneous inference procedures for high-dimensional linear models as described by Zhang, X., and Cheng, G. (2017) <doi:10.1080/01621459.2016.1166114>.

This package provides tools to download and merge data files on sub-national conflict, violence and protests from <http://www.x-sub.org>.

R-based access to mass-spectrometry (MS) data. While many packages exist to process MS data, many of these make it difficult to access the underlying mass-to-charge ratio (m/z), intensity, and retention time of the files themselves. This package is designed to format MS data in a tidy fashion and allows the user perform the plotting and analysis.

Robust tail dependence estimation for bivariate models. This package is based on two papers by the authors:'Robust and bias-corrected estimation of the coefficient of tail dependence and Robust and bias-corrected estimation of probabilities of extreme failure sets'. This work was supported by a research grant (VKR023480) from VILLUM FONDEN and an international project for scientific cooperation (PICS-6416).

This package contains the function run.eqs() which calls an EQS script file, executes the EQS estimation, and, finally, imports the results as R objects. These two steps can be performed separately: call.eqs() calls and executes EQS, whereas read.eqs() imports existing EQS outputs as objects into R. It requires EQS 6.2 (build 98 or higher).

Machine learning-based tools to predict DNA methylation of locus-specific repetitive elements (RE) by learning surrounding genetic and epigenetic information. These tools provide genomewide and single-base resolution of DNA methylation prediction on RE that are difficult to measure using array-based or sequencing-based platforms, which enables epigenome-wide association study (EWAS) and differentially methylated region (DMR) analysis on RE.

Show physics, math and engineering students how an ODE solver is made and how effective R classes can be for the construction of the equations that describe natural phenomena. Inspiration for this work comes from the book on "Computer Simulations in Physics" by Harvey Gould, Jan Tobochnik, and Wolfgang Christian. Book link: <http://www.compadre.org/osp/items/detail.cfm?ID=7375>.

Facilitates the design and generation of optimal color (or symbol) codes that can be used to mark and identify individual animals. These codes are made such that the IDs are robust to partial erasure: even if sections of the code are lost, the entire identity of the animal can be reconstructed. Thus, animal subjects are not confused and no ambiguity is introduced.

This package is an R package that offers models and tools for subject level analysis of X chromosome inactivation (XCI) and XCI-escape inference.

This package provides conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

Raider is a simple shredding program built for GNOME. Also known as File Shredder, it uses the GNU Core Utility called shred to securely delete files.

Roffit is a program that reads an nroff file and outputs an HTML file. It is typically used to display man pages on a web site.

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

This package implements the inference of candidate master regulator proteins from multi-omics data (MOMA) algorithm, as well as ancillary analysis and visualization functions.

This package implements biplot (2d and 3d) of multivariate data based on principal components analysis and diagnostic tools of the quality of the reduction.

This package provides functions to produce MCMC samples for posterior inference in semiparametric Bayesian discrete time competing risks recurrent events models and multistate models.

Generalization of the Bayesian classification and regression tree (CART) model that partitions subjects into terminal nodes and tailors regression model to each terminal node.

Search and access more than ten thousand datasets included in BCRPDATA (see <https://estadisticas.bcrp.gob.pe/estadisticas/series/ayuda/bcrpdata> for more information).

Calculate date of birth, age, and gender, and generate anonymous sequence numbers from CPR numbers. <https://en.wikipedia.org/wiki/Personal_identification_number_(Denmark)>.

Estimate the Deterministic Input, Noisy "And" Gate (DINA) cognitive diagnostic model parameters using the Gibbs sampler described by Culpepper (2015) <doi:10.3102/1076998615595403>.

Constructs a shiny app function with interactive displays for summary and analysis of variance regression tables, and parallel coordinate plots of data and residuals.

This package provides a tool to run Monte Carlo simulation of catastrophe model event loss tables, using a Poisson frequency and Beta severity distribution.

Perform dynamic model averaging with grid search as in Dangl and Halling (2012) <doi:10.1016/j.jfineco.2012.04.003> using parallel computing.