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r-paleomorph 0.1.4
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://github.com/timcdlucas/paleomorph/
Licenses: Expat
Build system: r
Synopsis: Geometric Morphometric Tools for Paleobiology
Description:

Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.

r-sportstour 0.1.0
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SportsTour
Licenses: GPL 2+ GPL 3+
Build system: r
Synopsis: Display Tournament Fixtures using Knock Out and Round Robin Techniques
Description:

Use of Knock Out and Round Robin Techniques in preparing tournament fixtures as discussed in the Book Health and Physical Education by Dr. V K Sharma'(2018,ISBN:978-93-5272-134-4).

r-surveystat 1.0.3
Propagated dependencies: r-rlang@1.1.6 r-ggplot2@4.0.1 r-dplyr@1.1.4
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=SurveyStat
Licenses: GPL 3
Build system: r
Synopsis: Survey Data Cleaning, Weighting and Analysis
Description:

This package provides utilities for cleaning survey data, computing weights, and performing descriptive statistical analysis. Methods follow Lohr (2019, ISBN:978-0367272454) "Sampling: Design and Analysis" and Lumley (2010) <doi:10.1002/9780470580066>.

r-smlmkalman 0.1.1
Propagated dependencies: r-truncnorm@1.0-9 r-spdep@1.4-1 r-scales@1.4.0 r-pracma@2.4.6
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://cran.r-project.org/package=smlmkalman
Licenses: GPL 2
Build system: r
Synopsis: Generation and Tracking of Super-Resolution Filamentous Datasets
Description:

This package provides a pair of functions that allow for the generation and tracking of coordinate data clouds without a time dimension, primarily for use in super-resolution plant micro-tubule image segmentation.

r-recordtest 2.2.0
Propagated dependencies: r-ggplot2@4.0.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/JorgeCastilloMateo/RecordTest
Licenses: GPL 3
Build system: r
Synopsis: Inference Tools in Time Series Based on Record Statistics
Description:

Statistical tools based on the probabilistic properties of the record occurrence in a sequence of independent and identically distributed continuous random variables. In particular, tools to prepare a time series as well as distribution-free trend and change-point tests and graphical tools to study the record occurrence. Details about the implemented tools can be found in Castillo-Mateo et al. (2023a) <doi:10.18637/jss.v106.i05> and Castillo-Mateo et al. (2023b) <doi:10.1016/j.atmosres.2023.106934>.

r-r2dii-data 0.6.1
Propagated dependencies: r-lifecycle@1.0.4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://rmi-pacta.github.io/r2dii.data/
Licenses: CC0
Build system: r
Synopsis: Datasets to Measure the Alignment of Corporate Loan Books with Climate Goals
Description:

These datasets support the implementation in R of the software PACTA (Paris Agreement Capital Transition Assessment), which is a free tool that calculates the alignment between corporate lending portfolios and climate scenarios (<https://www.transitionmonitor.com/>). Financial institutions use PACTA to study how their capital allocation decisions align with climate change mitigation goals. Because both financial institutions and market data providers keep their data private, this package provides fake, public data to enable the development and use of PACTA in R.

r-biscuiteer 1.24.0
Propagated dependencies: r-biobase@2.70.0 r-biocgenerics@0.56.0 r-biocparallel@1.44.0 r-biscuiteerdata@1.24.0 r-bsseq@1.46.0 r-data-table@1.17.8 r-delayedmatrixstats@1.32.0 r-dmrseq@1.30.0 r-genomeinfodb@1.46.0 r-genomicranges@1.62.0 r-gtools@3.9.5 r-hdf5array@1.38.0 r-homo-sapiens@1.3.1 r-impute@1.84.0 r-iranges@2.44.0 r-matrix@1.7-4 r-matrixstats@1.5.0 r-mus-musculus@1.3.1 r-qdnaseq@1.46.0 r-qualv@0.3-5 r-r-utils@2.13.0 r-readr@2.1.6 r-rsamtools@2.26.0 r-rtracklayer@1.70.0 r-s4vectors@0.48.0 r-summarizedexperiment@1.40.0 r-variantannotation@1.56.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://github.com/trichelab/biscuiteer
Licenses: GPL 3
Build system: r
Synopsis: Convenience functions for the Biscuit package
Description:

This package provides a test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

r-damefinder 1.22.0
Propagated dependencies: r-biocgenerics@0.56.0 r-biostrings@2.78.0 r-bumphunter@1.52.0 r-cowplot@1.2.0 r-genomicalignments@1.46.0 r-genomicranges@1.62.0 r-ggplot2@4.0.1 r-iranges@2.44.0 r-limma@3.66.0 r-plyr@1.8.9 r-readr@2.1.6 r-reshape2@1.4.5 r-rsamtools@2.26.0 r-s4vectors@0.48.0 r-seqinfo@1.0.0 r-stringr@1.6.0 r-summarizedexperiment@1.40.0 r-variantannotation@1.56.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/DAMEfinder
Licenses: Expat
Build system: r
Synopsis: Differential allelicly methylated regions
Description:

This package offers functionality for taking methtuple or Bismark outputs to calculate ASM scores and compute DAMEs regions. It also offers nice visualization of methyl-circle plots.

r-colorspace 2.1-2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/colorspace
Licenses: Modified BSD
Build system: r
Synopsis: Color space manipulation
Description:

This package carries out a mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided.

r-biased-urn 2.0.12
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://www.agner.org/random/
Licenses: GPL 3+
Build system: r
Synopsis: Biased urn model distributions
Description:

This package provides statistical models of biased sampling in the form of univariate and multivariate noncentral hypergeometric distributions, including Wallenius' noncentral hypergeometric distribution and Fisher's noncentral hypergeometric distribution (also called extended hypergeometric distribution).

r-lpsolveapi 5.5.2.0-17.14
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/package=lpSolveAPI
Licenses: LGPL 2.0
Build system: r
Synopsis: Interface to lp_solve
Description:

The lpSolveAPI package provides an R interface to lp_solve, a MILP, solver with support for pure linear, (mixed) integer/binary, semi-continuous and SOS models.

r-nbconvertr 1.3.2
Dependencies: python-nbconvert@7.16.6 pandoc@2.19.2
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://cran.r-project.org/web/packages/nbconvertR/
Licenses: GPL 3
Build system: r
Synopsis: Vignette engine wrapping Jupyter notebooks
Description:

This package calls the Jupyter script nbconvert to create vignettes from notebooks. Those notebooks (.ipynb files) are files containing rich text, code, and its output. Code cells can be edited and evaluated interactively.

r-bigassertr 0.1.7
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/privefl/bigassertr
Licenses: GPL 3
Build system: r
Synopsis: Assertion and message functions
Description:

This package provides enhanced message functions (cat() / message() / warning() / error()) using wrappers around sprintf(). It also provides multiple assertion functions (e.g. to check class, length, values, files, arguments, etc.).

ruby-gemtext 1.0.3
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: https://github.com/exastencil/gemtext
Licenses: Expat
Build system: ruby
Synopsis: Gemtext parser for Ruby
Description:

This package is a Ruby parser library for Gemtext (hypertext format which is intended to serve as the native response format of the Gemini file transfer protocol) and produces a document object of various nodes.

r-fourdndata 1.10.0
Propagated dependencies: r-s4vectors@0.48.0 r-iranges@2.44.0 r-hicexperiment@1.10.0 r-genomicranges@1.62.0 r-biocfilecache@3.0.0
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/js2264/fourDNData
Licenses: Expat
Build system: r
Synopsis: 4DN data package
Description:

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

r-flowploidy 1.36.0
Propagated dependencies: r-shiny@1.11.1 r-rmarkdown@2.30 r-minpack-lm@1.2-4 r-knitr@1.50 r-flowcore@2.22.0 r-catools@1.18.3 r-car@3.1-3
Channel: guix-bioc
Location: guix-bioc/packages/f.scm (guix-bioc packages f)
Home page: https://github.com/plantarum/flowPloidy
Licenses: GPL 3
Build system: r
Synopsis: Analyze flow cytometer data to determine sample ploidy
Description:

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

r-fourscores 1.5.1
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://cran.r-project.org/package=FourScores
Licenses: GPL 3
Build system: r
Synopsis: Game for Human vs. Human or Human vs. AI
Description:

This package provides a game for two players: Who gets first four in a row (horizontal, vertical or diagonal) wins. As board game published by Milton Bradley, designed by Howard Wexler and Ned Strongin.

r-fabletools 0.6.0
Propagated dependencies: r-vctrs@0.6.5 r-tsibble@1.2.0 r-tidyselect@1.2.1 r-tidyr@1.3.1 r-tibble@3.3.0 r-scales@1.4.0 r-rlang@1.1.6 r-r6@2.6.1 r-progressr@0.18.0 r-lifecycle@1.0.4 r-ggplot2@4.0.1 r-ggdist@3.3.3 r-generics@0.1.4 r-dplyr@1.1.4 r-distributional@0.5.0
Channel: guix-cran
Location: guix-cran/packages/f.scm (guix-cran packages f)
Home page: https://fabletools.tidyverts.org/
Licenses: GPL 3
Build system: r
Synopsis: Core Tools for Packages in the 'fable' Framework
Description:

This package provides tools, helpers and data structures for developing models and time series functions for fable and extension packages. These tools support a consistent and tidy interface for time series modelling and analysis.

r-image-otsu 0.1.1
Propagated dependencies: r-rcpp@1.1.0
Channel: guix-cran
Location: guix-cran/packages/i.scm (guix-cran packages i)
Home page: https://github.com/bnosac/image
Licenses: Expat
Build system: r
Synopsis: Otsu's Image Segmentation Method
Description:

An implementation of the Otsu's Image Segmentation Method described in the paper: "A C++ Implementation of Otsu's Image Segmentation Method". The algorithm is explained at <doi:10.5201/ipol.2016.158>.

r-misreparma 0.0.2
Propagated dependencies: r-tseries@0.10-58 r-mixtools@2.0.0.1 r-boot@1.3-32
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=MisRepARMA
Licenses: GPL 2+
Build system: r
Synopsis: Misreported Time Series Analysis
Description:

This package provides a simple and trustworthy methodology for the analysis of misreported continuous time series. See Moriña, D, Fernández-Fontelo, A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.

r-nonparaeff 0.5-15
Propagated dependencies: r-lpsolve@5.6.23 r-hmisc@5.2-4 r-geometry@0.5.2
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Nonparametric Methods for Measuring Efficiency and Productivity
Description:

Efficiency and productivity indices are measured using this package. This package contains functions for measuring efficiency and productivity of decision making units (DMUs) under the framework of Data Envelopment Analysis (DEA) and its variations.

r-neo4jshell 0.1.2
Propagated dependencies: r-sys@3.4.3 r-ssh@0.9.4 r-r-utils@2.13.0 r-magrittr@2.0.4 r-fs@1.6.6
Channel: guix-cran
Location: guix-cran/packages/n.scm (guix-cran packages n)
Home page: https://cran.r-project.org/package=neo4jshell
Licenses: Expat
Build system: r
Synopsis: Querying and Managing 'Neo4J' Databases in 'R'
Description:

Sends queries to a specified Neo4J graph database, capturing results in a dataframe where appropriate. Other useful functions for the importing and management of data on the Neo4J server and basic local server admin.

r-opthedging 1.0
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: http://www.r-project.org
Licenses: GPL 2+
Build system: r
Synopsis: Estimation of value and hedging strategy of call and put options
Description:

Estimation of value and hedging strategy of call and put options, based on optimal hedging and Monte Carlo method, from Chapter 3 of Statistical Methods for Financial Engineering', by Bruno Remillard, CRC Press, (2013).

r-omopsketch 1.0.1
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.6.0 r-rlang@1.1.6 r-purrr@1.2.0 r-patientprofiles@1.4.5 r-omopgenerics@1.3.6 r-lifecycle@1.0.4 r-dplyr@1.1.4 r-cohortconstructor@0.6.1 r-clock@0.7.3 r-cli@3.6.5
Channel: guix-cran
Location: guix-cran/packages/o.scm (guix-cran packages o)
Home page: https://OHDSI.github.io/OmopSketch/
Licenses: FSDG-compatible
Build system: r
Synopsis: Characterise Tables of an OMOP Common Data Model Instance
Description:

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

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