Extracts colonisation and branching times of island species to be used for analysis in the R package DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.

Modified versions of the lag() and summary() functions: glag() and gsummary(). The prefix g is a reminder of who to blame if things do not work as they should.

Downloads and organizes datasets using BCB's API <https://www.bcb.gov.br/>. Offers options for caching with the memoise package and , multicore/multisession with furrr and format of output data (long/wide).

Analyzes raw abundance data from a cellular thermal shift experiment and calculates melt temperatures and melt shifts for each protein in the experiment. McCracken (2022) <doi:10.1101/2022.12.30.522131>.

Optimal testing under general dependence. The R package implements procedures proposed in Wang, Han, and Tong (2022). The package includes parameter estimation procedures, the computation for the posterior probabilities, and the testing procedure.

Shiny app to interactively visualize hierarchical clustering with prototypes. For details on hierarchical clustering with prototypes, see Bien and Tibshirani (2011) <doi:10.1198/jasa.2011.tm10183>. This package currently launches the application.

Fill missing symmetrical data with mirroring, calculate Procrustes alignments with or without scaling, and compute standard or vector correlation and covariance matrices (congruence coefficients) of 3D landmarks. Tolerates missing data for all analyses.

Access the data of the Catalogue of the Timber Forest Species of the Peruvian Amazon Vásquez Martà nez, R., & Rojas Gonzáles, R.D.P.(2022)<doi:10.21704/rfp.v37i3.1956>.

This package provides a pair of functions that allow for the generation and tracking of coordinate data clouds without a time dimension, primarily for use in super-resolution plant micro-tubule image segmentation.

This package provides utilities for cleaning survey data, computing weights, and performing descriptive statistical analysis. Methods follow Lohr (2019, ISBN:978-0367272454) "Sampling: Design and Analysis" and Lumley (2010) <doi:10.1002/9780470580066>.

Use of Knock Out and Round Robin Techniques in preparing tournament fixtures as discussed in the Book Health and Physical Education by Dr. V K Sharma'(2018,ISBN:978-93-5272-134-4).

Statistical tools based on the probabilistic properties of the record occurrence in a sequence of independent and identically distributed continuous random variables. In particular, tools to prepare a time series as well as distribution-free trend and change-point tests and graphical tools to study the record occurrence. Details about the implemented tools can be found in Castillo-Mateo et al. (2023a) <doi:10.18637/jss.v106.i05> and Castillo-Mateo et al. (2023b) <doi:10.1016/j.atmosres.2023.106934>.

These datasets support the implementation in R of the software PACTA (Paris Agreement Capital Transition Assessment), which is a free tool that calculates the alignment between corporate lending portfolios and climate scenarios (<https://www.transitionmonitor.com/>). Financial institutions use PACTA to study how their capital allocation decisions align with climate change mitigation goals. Because both financial institutions and market data providers keep their data private, this package provides fake, public data to enable the development and use of PACTA in R.

This package provides a test harness for bsseq loading of Biscuit output, summarization of WGBS data over defined regions and in mappable samples, with or without imputation, dropping of mostly-NA rows, age estimates, etc.

This package offers functionality for taking methtuple or Bismark outputs to calculate ASM scores and compute DAMEs regions. It also offers nice visualization of methyl-circle plots.

This package carries out a mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided.

The lpSolveAPI package provides an R interface to lp_solve, a MILP, solver with support for pure linear, (mixed) integer/binary, semi-continuous and SOS models.

This package provides enhanced message functions (cat() / message() / warning() / error()) using wrappers around sprintf(). It also provides multiple assertion functions (e.g. to check class, length, values, files, arguments, etc.).

This package provides statistical models of biased sampling in the form of univariate and multivariate noncentral hypergeometric distributions, including Wallenius' noncentral hypergeometric distribution and Fisher's noncentral hypergeometric distribution (also called extended hypergeometric distribution).

This package calls the Jupyter script nbconvert to create vignettes from notebooks. Those notebooks (.ipynb files) are files containing rich text, code, and its output. Code cells can be edited and evaluated interactively.

This package is a Ruby parser library for Gemtext (hypertext format which is intended to serve as the native response format of the Gemini file transfer protocol) and produces a document object of various nodes.

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Create and manage tournament brackets for various competition formats including single elimination, double elimination, round robin, Swiss system, and group-stage-to-knockout tournaments. Provides tools for seeding, scheduling, recording results, and tracking standings.