This package provides some basic linear algebra functionality for sparse matrices. It includes Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

EBNF is a Ruby parser for W3C EBNF and a parser generator for PEG and LL(1). Also includes parsing modes for ISO EBNF and ABNF.

This package provides a client library for making requests from Ruby. It uses a simple method chaining system for building requests, similar to Python's Requests.

hdWGCNA is an R package for performing weighted gene co-expression network analysis in high dimensional -omics such as single-cell RNA-seq or spatial transcriptomics.

NbClust provides 30 indexes for determining the optimal number of clusters in a data set and offers the best clustering scheme from different results to the user.

This package provides a set of functions with example data for graphing, pruning, and mapping models. These models are from hierarchical clustering, and classification and regression trees.

Allow numbers to be presented in an English language version, one, two, three, ... Ordinals are also available, first, second, third, ... and indefinite article choice, "a" or "an".

This package provides an R interface to all Enrichr databases, a web-based tool for analyzing gene sets and returns any enrichment of common annotated biological functions.

This package provides cross-platform utilities for prompting the user for credentials or a passphrase, for example to authenticate with a server or read a protected key.

This package gives you the ability to automatically generate and serve an HTTP API from R functions using the annotations in the R documentation around your functions.

This tool lets you search for ROP gadgets in binaries. Some facilities are included for automatically generating chains of gadgets to execute system calls.

Lino provides an interface to run external commands. It provides an interface to add options as well as managing the standard input, output and error streams.

Arel is an SQL Abstract Syntax Tree (AST) manager for Ruby. It simplifies the generation of complex SQL queries and adapts to various relational database implementations.

Nori is a simple XML parsing ripped from Crack which in-turn ripped from Merb. It supports pluggable parsers and ships with both REXML and Nokogiri implementations.

EDTF-Ruby provides a parser and an API for the EDTF standard, implemented as an extension to Ruby's Date class.

This package provides a collection of HTML, JavaScript, and CSS assets that dynamically generate beautiful documentation from a Swagger compliant API.

This package gives the ability to automatically generate and serve an HTTP API from R functions using the annotations in the R documentation around your functions.

Saves the delayed operations of a DelayedArray to a HDF5 file. This enables efficient recovery of the DelayedArray's contents in other languages and analysis frameworks.

This package provides a set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

This package provides a dependency manager for R projects that allows you to manage the R packages your project depends on in an isolated, portable, and reproducible way.

This package provides functions to calculate: moments, Pearson's kurtosis, Geary's kurtosis and skewness; it also includes tests related to them (Anscombe-Glynn, D'Agostino, Bonett-Seier).

This package provides text and label geometries for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from the data points.

This package provides tools to compute polychoric and polyserial correlations by quick "two-step" methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.