This package provides a collection of moment-matching methods for computing the cumulative distribution function of a positively-weighted sum of chi-squared random variables. Methods include the Satterthwaite-Welch method, Hall-Buckley-Eagleson method, Wood's F method, and the Lindsay-Pilla-Basak method.

Regression methods for the meta-SDT model. The package implements methods for cognitive experiments of metacognition as described in Kristensen, S. B., Sandberg, K., & Bibby, B. M. (2020). Regression methods for metacognitive sensitivity. Journal of Mathematical Psychology, 94. <doi:10.1016/j.jmp.2019.102297>.

In this implementation of the Naive Bayes classifier following class conditional distributions are available: Bernoulli', Categorical', Gaussian', Poisson', Multinomial and non-parametric representation of the class conditional density estimated via Kernel Density Estimation. Implemented classifiers handle missing data and can take advantage of sparse data.

This package performs minimax linkage hierarchical clustering. Every cluster has an associated prototype element that represents that cluster as described in Bien, J., and Tibshirani, R. (2011), "Hierarchical Clustering with Prototypes via Minimax Linkage," The Journal of the American Statistical Association, 106(495), 1075-1084.

Implementation of PsychroLib <https://github.com/psychrometrics/psychrolib> library which contains functions to enable the calculation properties of moist and dry air in both metric (SI) and imperial (IP) systems of units. References: Meyer, D. and Thevenard, D (2019) <doi:10.21105/joss.01137>.

This package provides a pipeline to perform small area estimation and prevalence mapping of binary indicators using health and demographic survey data, described in Fuglstad et al. (2022) <doi:10.48550/arXiv.2110.09576> and Wakefield et al. (2020) <doi:10.1111/insr.12400>.

Input/Output, processing and visualization of spectra taken with different spectrometers, including SVC (Spectra Vista), ASD and PSR (Spectral Evolution). Implements an S3 class spectra that other packages can build on. Provides methods to access, plot, manipulate, splice sensor overlap, vector normalize and smooth spectra.

This package provides an intuitive interface for working with the competing risk endpoints. The package wraps the cmprsk package, and exports functions for univariate cumulative incidence estimates and competing risk regression. Methods follow those introduced in Fine and Gray (1999) <doi:10.1002/sim.7501>.

Converts XML documents to R dataframes and dataframes to XML documents. A wide variety of options allows for different XML formats and flexible control of the conversion process. Results can be exported to CSV and Excel, if desired. Also converts XML data to R lists.

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

This package provides utilities to understand and describe posterior distributions and Bayesian models. It includes point-estimates such as Maximum A Posteriori (MAP), measures of dispersion such as Highest Density Interval (HDI), and indices used for null-hypothesis testing (such as ROPE percentage and pd).

Rachana is a Malayalam font designed by Hussain K H. The project was part of Rachana Aksharavedi for the original script of Malayalam in computing. Rachana has about 1,200+ glyphs for Malayalam and contains glyphs required for printing old Malayalam books without compromising the writing style.

cl-rmath is a simple, autogenerated foreign interface for the standalone R API libRmath. There has been no effort to provide a high-level interface for the original library, instead, this library is meant to serve as a building block for such an interface.

Example data for MEDIPS and QSEA packages, consisting of chromosome 22 MeDIP and control/Input sample data. Additionally, the package contains MeDIP seq data from 3 NSCLC samples and adjacent normal tissue (chr 20-22). All data has been aligned to human genome hg19.

ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.

Implementation of the bootkmeans algorithm, a bootstrap augmented k-means algorithm that returns probabilistic cluster assignments. From paper by Ghashti, J.S., Andrews, J.L. Thompson, J.R.J., Epp, J. and H.S. Kochar (2025), "A bootstrap augmented k-means algorithm for fuzzy partitions" (Submitted).

This package implements a system of linear equations to recover unreported diagnostic test accuracy cell counts from commonly reported measures such as sensitivity, specificity, predictive values, prevalence, and sample size. The package is intended for applied researchers who require complete 2x2 table counts for downstream analyses.

Query NCBI Entrez and retrieve PubMed records in XML or text format. Process PubMed records by extracting and aggregating data from selected fields. A large number of records can be easily downloaded via this simple-to-use interface to the NCBI PubMed API.

Extracting desired data using the proper Census variable names can be time-consuming. This package takes the pain out of that process by providing functions to quickly locate variables and download labeled tables from the Census APIs (<https://www.census.gov/data/developers/data-sets.html>).

The functionality provided by this package is an expansion of the code of the statebins package, created by B. Rudis (2022), <doi:10.32614/CRAN.package.statebins>. It allows for the creation of square choropleths for the entire world, provided an appropriate specified grid is supplied.

This package provides methods for searching through genealogical data and displaying the results. Plotting algorithms assist with data exploration and publication-quality image generation. Includes interactive genealogy visualization tools. Provides parsing and calculation methods for variables in descendant branches of interest. Uses the Grammar of Graphics.

Input multiple versions of a source document, and receive HTML code for a highlighted version of the source document indicating the frequency of occurrence of phrases in the different versions. This method is described in Chapter 3 of Rogers (2024) <https://digitalcommons.unl.edu/dissertations/AAI31240449/>.

This package implements the Linear Approach to Threshold with Ergodic Rate (LATER) model, which predicts distributions of reaction times and summarises them with as little as two free parameters. Allows for easy visualisation and comparison of datasets, along with fitting of datasets using the LATER model.

This package provides unified workflows for quality control, normalization, and visualization of proteomic and metabolomic data. The package simplifies preprocessing through automated imputation, scaling, and principal component analysis (PCA)-based exploratory analysis, enabling researchers to prepare omics datasets efficiently for downstream statistical and machine learning analyses.