Includes functions and examples to compute NEAT, the Network Enrichment Analysis Test described in Signorelli et al. (2016, <DOI:10.1186/s12859-016-1203-6>).

Extends flexclust with an R implementation of order constrained solutions in k-means clustering (Steinley and Hubert, 2008, <doi:10.1007/s11336-008-9058-z>).

Implementation of the pattern recognition technique Principal Component Pursuit tailored to environmental health data, as described in Gibson et al (2022) <doi:10.1289/EHP10479>.

This package provides a semi-parametric estimation method for the Cox model with left-truncated data using augmented information from the marginal of truncation times.

Finds equivalence classes corresponding to a symmetric relation or undirected graph. Finds total order consistent with partial order or directed graph (so-called topological sort).

This package provides a toolkit implementing the Matrix Profile concept that was created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.

Trauma Mortality prediction for ICD-9, ICD-10, and AIS lexicons in long or wide format based on Dr. Alan Cook's tmpm mortality model.

Suite of tools to support the practice of tada science. It includes an engaging package roulette that is designed to facilitate learning about new packages.

This package performs Wilcoxon-Mann-Whitney test in the presence of missing data with controlled Type I error regardless of the values of missing data.

There is limited native support for external pointers in the R interface. This package provides some basic tools to verify, create and modify externalptr objects.

This is an R package for doublet annotation of single cell RNA sequencing data. scds provides methods to annotate doublets in scRNA-seq data computationally.

This is a package for detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.

This package provides a close to zero dependency package to draw and display Venn diagrams up to 7 sets, and any Boolean union of set intersections.

This package provides tools for maximum a posteriori estimation for linear and generalized linear mixed-effects models in a Bayesian setting. It extends the lme4 package.

This package loads electrophysiology data from ABF2 files, as created by Axon Instruments/Molecular Devices software. Only files recorded in gap-free mode are currently supported.

raylib is a high-level library for video game programming. It aims to abstract away platform and graphics details, allowing you to focus on writing your game.

rfkill is a simple tool for accessing the rfkill device interface, which is used to enable and disable wireless networking devices, typically WLAN, Bluetooth and mobile broadband.

Access and handle APIs that use the international open311 GeoReport v2 standard for civic issue tracking <https://wiki.open311.org/GeoReport_v2/>. Retrieve civic service types and request data. Select and add available open311 endpoints and jurisdictions. Implicitly supports custom queries and open311 extensions. Requires a minimal number of hard dependencies while still allowing the integration in common R formats ('xml2', tibble', sf').

This package provides a wrapper for the Deutsche Nationalbibliothek (German National Library) API', available at <https://www.dnb.de/EN/Home/home_node.html>. The German National Library is the German central archival library, collecting, archiving, bibliographically classifying all German and German-language publications, foreign publications about Germany, translations of German works, and the works of German-speaking emigrants published abroad between 1933 and 1945.

Create tests and tasks compliant with the Question & Test Interoperability (QTI) information model version 2.1. Input sources are Rmd/md description files or S4-class objects. Output formats include standalone zip or xml files. Supports the generation of basic task types (single and multiple choice, order, pair association, matching tables, filling gaps and essay) and provides a comprehensive set of attributes for customizing tests.

We provide a toolbox to fit univariate and multivariate linear mixed models via data transforming augmentation. Users can also fit these models via typical data augmentation for a comparison. It returns either maximum likelihood estimates of unknown model parameters (hyper-parameters) via an EM algorithm or posterior samples of those parameters via MCMC. Also see Tak et al. (2019) <doi:10.1080/10618600.2019.1704295>.

Univariate and multivariate versions of risk-based control charts. Univariate versions of control charts, such as the risk-based version of X-bar, Moving Average (MA), Exponentially Weighted Moving Average Control Charts (EWMA), and Cumulative Sum Control Charts (CUSUM) charts. The risk-based version of the multivariate T2 control chart. Plot and summary functions. Kosztyan et. al. (2016) <doi:10.1016/j.eswa.2016.06.019>.

This package provides a tool for undergraduate and graduate courses in open-channel hydraulics. Provides functions for computing normal and critical depths, steady-state water surface profiles (e.g. backwater curves) and unsteady flow computations (e.g. flood wave routing) as described in Koohafkan MC, Younis BA (2015). "Open-channel computation with R." The R Journal, 7(2), 249â 262. <doi: 10.32614/RJ-2015-034>.

This package provides a function for multivariate outlier detection named Modified Stahel-Donoho (MSD) estimators is contained. The function is for elliptically distributed datasets and recognizes outliers based on Mahalanobis distance. The function is called the single core version in Wada & Tsubaki (2013) <doi:10.1109/CLOUDCOM-ASIA.2013.86> and evaluated with other methods in Wada, Kawano & Tsubaki (2020) <doi:10.17713/ajs.v49i2.872>.