This module provides a Python interface to pkg-config. It can be used to find all pkg-config packages, check if a package exists, check if a package meets certain version requirements, query CFLAGS and LDFLAGS and parse the output to build extensions with setup.py.

This module performs conversions between Python values and C bit field structs represented as Python byte strings. It is intended to have a similar interface as the struct module from Python, but working on bits instead of primitive data types like char, int, etc.

NARPS Open Pipelines is a project aimed at reproducing the 70 pipelines from the NARPS study (Botvinik-Nezer et al., 2020) and sharing them as an open resource for the community. It uses Nipype for workflow management and provides templates to facilitate the reproduction of neuroimaging analyses.

This package implements a CAN matrix object in Python which describes the CAN-communication and its needed objects such as board units, frames, signals, and values. It also includes two command-line tools (canconvert and cancompare) for converting and comparing CAN databases.

autoflake removes unused imports and unused variables from Python code as reported by pyflakes.

By default, it only removes unused imports for modules that are part of the standard library. Removal of unused variables is also disabled by default. It also removes useless pass statements.

Hypercorn is an ASGI web server based on the sans-io hyper, h11, h2, and wsproto libraries and inspired by Gunicorn. It supports HTTP/1, HTTP/2, WebSockets (over HTTP/1 and HTTP/2), ASGI/2, and ASGI/3 specifications. It can utilise asyncio, uvloop, or trio worker types.

pytest-qt is a Pytest plugin that allows programmers to write tests for PyQt5 and PySide2 applications.

The main usage is to use the qtbot fixture, responsible for handling qApp creation as needed and provides methods to simulate user interaction, like key presses and mouse clicks.

Unidecode provides ASCII transliterations of Unicode text. Unidecode is useful when integrating with legacy code that doesn't support Unicode, or for ease of entry of non-Roman names on a US keyboard, or when constructing ASCII machine identifiers from human-readable Unicode strings that should still be somewhat intelligible.

Halotools is a specialized python package for building and testing models of the galaxy-halo connection, and analyzing catalogs of dark matter halos. The core feature of Halotools is a modular platform for creating mock universes of galaxies starting from a catalog of dark matter halos obtained from a cosmological simulation.

t-Stochastic Neighborhood Embedding (t-SNE) is a highly successful method for dimensionality reduction and visualization of high dimensional datasets. A popular implementation of t-SNE uses the Barnes-Hut algorithm to approximate the gradient at each iteration of gradient descent. This package is a Cython wrapper for FIt-SNE.

Various definitions for a high-dimensional median exist and this Python package provides a number of fast implementations of these definitions. Medians are extremely useful due to their high breakdown point (up to 50% contamination) and have a number of nice applications in machine learning, computer vision, and high-dimensional statistics.

Logomaker is a Python package for generating publication-quality sequence logos. Logomaker can generate both standard and highly customized logos illustrating the properties of DNA, RNA, or protein sequences. Logos are rendered as vector graphics embedded within native matplotlib Axes objects, making them easy to style and incorporate into multi-panel figures.

The metacells package implements the improved metacell algorithm for single-cell RNA sequencing (scRNA-seq) data analysis within the scipy framework, and projection algorithm based on it. The original metacell algorithm was implemented in R. The Python package contains various algorithmic improvements and is scalable for larger data sets (millions of cells).

This package is a port of Python's built-in functools.lru_cache function for asyncio. To better handle async behaviour, it also ensures multiple concurrent calls will only result in 1 call to the wrapped function, with all awaits receiving the result of that call when it completes.

MQTT and MQTT-SN are lightweight publish/subscribe messaging transports for TCP/IP and connection-less protocols (such as UDP). The Eclipse Paho project provides client side implementations of MQTT and MQTT-SN in a variety of programming languages. This package is for the Python implementation of an MQTT version client class.

aiostream provides a collection of stream operators that can be combined to create asynchronous pipelines of operations. It can be seen as an asynchronous version of itertools, although some aspects are slightly different. All the provided operators return a unified interface called a stream. A stream is an enhanced asynchronous iterable.

The asttokens module annotates Python abstract syntax trees (ASTs) with the positions of tokens and text in the source code that generated them. It makes it possible for tools that work with logical AST nodes to find the particular text that resulted in those nodes, for example for automated refactoring or highlighting.

The nbconvert tool, jupyter nbconvert, converts notebooks to various other formats via Jinja templates. It allows you to convert an .ipynb notebook file into various static formats including:

1. HTML

2. LaTeX

3. PDF

4. Reveal JS

5. Markdown (md)

6. ReStructured Text (rst)

7. executable script

pycountry provides the ISO databases for the standards:

1. 639-3 (Languages)

2. 3166 (Countries)

3. 3166-3 (Deleted Countries)

4. 3166-2 (Subdivisions of countries)

5. 4217 (Currencies)

6. 15924 (Scripts)

It includes a copy from Debian’s pkg-isocodes and makes the data accessible through a Python API.

pycountry provides the ISO databases for the standards:

1. 639-3 (Languages)

2. 3166 (Countries)

3. 3166-3 (Deleted Countries)

4. 3166-2 (Subdivisions of countries)

5. 4217 (Currencies)

6. 15924 (Scripts)

It includes a copy from Debian’s pkg-isocodes and makes the data accessible through a Python API.

Soup Sieve is a CSS selector library designed to be used with Beautiful Soup 4. It aims to provide selecting, matching, and filtering using modern CSS selectors. Soup Sieve currently provides selectors from the CSS level 1 specifications up through the latest CSS level 4 drafts and beyond (though some are not yet implemented).

Astrolib PySynphot (hereafter referred to only as pysynphot) is an object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in IRAF. pysynphot simulates photometric data and spectra as they are observed with the Hubble Space Telescope (HST). Passbands for standard photometric systems are available, and users can incorporate their own filters, spectra, and data.

SnapTools can operate on snap files the following types of operations:

• index the reference genome before alignment;

• align reads to the corresponding reference genome;

• pre-process by convert pair-end reads into fragments, checking the mapping quality score, alignment and filtration;

• create the cell-by-bin matrix.

FontTools/TTX is a library to manipulate font files from Python. It supports reading and writing of TrueType/OpenType fonts, reading and writing of AFM files, reading (and partially writing) of PS Type 1 fonts. The package also contains a tool called “TTX” which converts TrueType/OpenType fonts to and from an XML-based format.