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r-pbtdesigns 1.0.0
Propagated dependencies: r-mass@7.3-65
Channel: guix-cran
Location: guix-cran/packages/p.scm (guix-cran packages p)
Home page: https://cran.r-project.org/package=PBtDesigns
Licenses: GPL 2+
Synopsis: Partially Balanced t-Designs (PBtDesigns)
Description:

The t-designs represent a generalized class of balanced incomplete block designs in which the number of blocks in which any t-tuple of treatments (t >= 2) occur together is a constant. When the focus of an experiment lies in grading and selecting treatment subgroups, t-designs would be preferred over the conventional ones, as they have the additional advantage of t-tuple balance. t-designs can be advantageously used in identifying the best crop-livestock combination for a particular location in Integrated Farming Systems that will help in generating maximum profit. But as the number of components increases, the number of possible t-component combinations will also increase. Most often, combinations derived from specific components are only practically feasible, for example, in a specific locality, farmers may not be interested in keeping a pig or goat and hence combinations involving these may not be of any use in that locality. In such situations partially balanced t-designs with few selected combinations appearing in a constant number of blocks (while others not at all appearing) may be useful (Sayantani Karmakar, Cini Varghese, Seema Jaggi & Mohd Harun (2021)<doi:10.1080/03610918.2021.2008436>). Further, every location may not have the resources to form equally sized homogeneous blocks. Partially balanced t-designs with unequal block sizes (Damaraju Raghavarao & Bei Zhou (1998)<doi:10.1080/03610929808832657>. Sayantani Karmakar, Cini Varghese, Seema Jaggi & Mohd Harun (2022)." Partially Balanced t-designs with unequal block sizes") prove to be more suitable for such situations.This package generates three series of partially balanced t-designs namely Series 1, Series 2 and Series 3. Series 1 and Series 2 are designs having equal block sizes and with treatment structures 4(t + 1) and a prime number, respectively. Series 3 consists of designs with unequal block sizes and with treatment structure n(n-1)/2. This package is based on the function named PBtD() for generating partially balanced t-designs along with their parameters, information matrices, average variance factors and canonical efficiency factors.

r-simcorrmix 0.1.1
Propagated dependencies: r-vgam@1.1-13 r-triangle@1.0 r-simmulticorrdata@0.2.2 r-nleqslv@3.3.5 r-mvtnorm@1.3-3 r-matrix@1.7-3 r-mass@7.3-65 r-ggplot2@3.5.2 r-bb@2019.10-1
Channel: guix-cran
Location: guix-cran/packages/s.scm (guix-cran packages s)
Home page: https://github.com/AFialkowski/SimCorrMix
Licenses: GPL 2
Synopsis: Simulation of Correlated Data with Multiple Variable Types Including Continuous and Count Mixture Distributions
Description:

Generate continuous (normal, non-normal, or mixture distributions), binary, ordinal, and count (regular or zero-inflated, Poisson or Negative Binomial) variables with a specified correlation matrix, or one continuous variable with a mixture distribution. This package can be used to simulate data sets that mimic real-world clinical or genetic data sets (i.e., plasmodes, as in Vaughan et al., 2009 <DOI:10.1016/j.csda.2008.02.032>). The methods extend those found in the SimMultiCorrData R package. Standard normal variables with an imposed intermediate correlation matrix are transformed to generate the desired distributions. Continuous variables are simulated using either Fleishman (1978)'s third order <DOI:10.1007/BF02293811> or Headrick (2002)'s fifth order <DOI:10.1016/S0167-9473(02)00072-5> polynomial transformation method (the power method transformation, PMT). Non-mixture distributions require the user to specify mean, variance, skewness, standardized kurtosis, and standardized fifth and sixth cumulants. Mixture distributions require these inputs for the component distributions plus the mixing probabilities. Simulation occurs at the component level for continuous mixture distributions. The target correlation matrix is specified in terms of correlations with components of continuous mixture variables. These components are transformed into the desired mixture variables using random multinomial variables based on the mixing probabilities. However, the package provides functions to approximate expected correlations with continuous mixture variables given target correlations with the components. Binary and ordinal variables are simulated using a modification of ordsample() in package GenOrd'. Count variables are simulated using the inverse CDF method. There are two simulation pathways which calculate intermediate correlations involving count variables differently. Correlation Method 1 adapts Yahav and Shmueli's 2012 method <DOI:10.1002/asmb.901> and performs best with large count variable means and positive correlations or small means and negative correlations. Correlation Method 2 adapts Barbiero and Ferrari's 2015 modification of the GenOrd package <DOI:10.1002/asmb.2072> and performs best under the opposite scenarios. The optional error loop may be used to improve the accuracy of the final correlation matrix. The package also contains functions to calculate the standardized cumulants of continuous mixture distributions, check parameter inputs, calculate feasible correlation boundaries, and summarize and plot simulated variables.

r-micromapst 3.1.1
Propagated dependencies: r-writexl@1.5.4 r-stringr@1.5.1 r-spdep@1.3-11 r-sf@1.0-21 r-rmapshaper@0.5.0 r-readxl@1.4.5 r-rcolorbrewer@1.1-3 r-labeling@0.4.3
Channel: guix-cran
Location: guix-cran/packages/m.scm (guix-cran packages m)
Home page: https://cran.r-project.org/package=micromapST
Licenses: GPL 2+
Synopsis: Linked Micromap Plots for U. S. and Other Geographic Areas
Description:

This package provides the users with the ability to quickly create linked micromap plots for a collection of geographic areas. Linked micromap plots are visualizations of geo-referenced data that link statistical graphics to an organized series of small maps or graphic images. The Help description contains examples of how to use the micromapST function. Contained in this package are border group datasets to support creating linked micromap plots for the 50 U.S. states and District of Columbia (51 areas), the U. S. 20 Seer Registries, the 105 counties in the state of Kansas, the 62 counties of New York, the 24 counties of Maryland, the 29 counties of Utah, the 32 administrative areas in China, the 218 administrative areas in the UK and Ireland (for testing only), the 25 districts in the city of Seoul South Korea, and the 52 counties on the Africa continent. A border group dataset contains the boundaries related to the data level areas, a second layer boundaries, a top or third layer boundary, a parameter list of run options, and a cross indexing table between area names, abbreviations, numeric identification and alias matching strings for the specific geographic area. By specifying a border group, the package create linked micromap plots for any geographic region. The user can create and provide their own border group dataset for any area beyond the areas contained within the package with the BuildBorderGroup function. In April of 2022, it was announced that maptools', rgdal', and rgeos R packages would be retired in middle to end of 2023 and removed from the CRAN libraries. The BuildBorderGroup function was dependent on these packages. micromapST functions were not impacted by the retired R packages. Upgrading of BuildBorderGroup function was completed and released with version 3.0.0 on August 10, 2023 using the sf R package. References: Carr and Pickle, Chapman and Hall/CRC, Visualizing Data Patterns with Micromaps, CRC Press, 2010. Pickle, Pearson, and Carr (2015), micromapST: Exploring and Communicating Geospatial Patterns in US State Data., Journal of Statistical Software, 63(3), 1-25., <https://www.jstatsoft.org/v63/i03/>. Copyrighted 2013, 2014, 2015, 2016, 2022, 2023, 2024, and 2025 by Carr, Pearson and Pickle.

r-greymodels 2.0.1
Propagated dependencies: r-shinywidgets@0.9.0 r-shinydashboard@0.7.3 r-shiny@1.10.0 r-scales@1.4.0 r-readxl@1.4.5 r-plotly@4.10.4 r-particle-swarm-optimisation@1.0.1 r-metrics@0.1.4 r-ggplot2@3.5.2 r-expm@1.0-0 r-dplyr@1.1.4 r-cmna@1.0.5
Channel: guix-cran
Location: guix-cran/packages/g.scm (guix-cran packages g)
Home page: https://github.com/havishaJ/Greymodels
Licenses: GPL 3
Synopsis: Shiny App for Grey Forecasting Model
Description:

The Greymodels Shiny app is an interactive interface for statistical modelling and forecasting using grey-based models. It covers several state-of-the-art univariate and multivariate grey models. A user friendly interface allows users to easily compare the performance of different models for prediction and among others, visualize graphical plots of predicted values within user chosen confidence intervals. Chang, C. (2019) <doi:10.24818/18423264/53.1.19.11>, Li, K., Zhang, T. (2019) <doi:10.1007/s12667-019-00344-0>, Ou, S. (2012) <doi:10.1016/j.compag.2012.03.007>, Li, S., Zhou, M., Meng, W., Zhou, W. (2019) <doi:10.1080/23307706.2019.1666310>, Xie, N., Liu, S. (2009) <doi:10.1016/j.apm.2008.01.011>, Shao, Y., Su, H. (2012) <doi:10.1016/j.aasri.2012.06.003>, Xie, N., Liu, S., Yang, Y., Yuan, C. (2013) <doi:10.1016/j.apm.2012.10.037>, Li, S., Miao, Y., Li, G., Ikram, M. (2020) <doi:10.1016/j.matcom.2019.12.020>, Che, X., Luo, Y., He, Z. (2013) <doi:10.4028/www.scientific.net/AMM.364.207>, Zhu, J., Xu, Y., Leng, H., Tang, H., Gong, H., Zhang, Z. (2016) <doi:10.1109/appeec.2016.7779929>, Luo, Y., Liao, D. (2012) <doi:10.4028/www.scientific.net/AMR.507.265>, Bilgil, H. (2020) <doi:10.3934/math.2021091>, Li, D., Chang, C., Chen, W., Chen, C. (2011) <doi:10.1016/j.apm.2011.04.006>, Chen, C. (2008) <doi:10.1016/j.chaos.2006.08.024>, Zhou, W., Pei, L. (2020) <doi:10.1007/s00500-019-04248-0>, Xiao, X., Duan, H. (2020) <doi:10.1016/j.engappai.2019.103350>, Xu, N., Dang, Y. (2015) <doi:10.1155/2015/606707>, Chen, P., Yu, H.(2014) <doi:10.1155/2014/242809>, Zeng, B., Li, S., Meng, W., Zhang, D. (2019) <doi:10.1371/journal.pone.0221333>, Liu, L., Wu, L. (2021) <doi:10.1016/j.apm.2020.08.080>, Hu, Y. (2020) <doi:10.1007/s00500-020-04765-3>, Zhou, P., Ang, B., Poh, K. (2006) <doi:10.1016/j.energy.2005.12.002>, Cheng, M., Li, J., Liu, Y., Liu, B. (2020) <doi:10.3390/su12020698>, Wang, H., Wang, P., Senel, M., Li, T. (2019) <doi:10.1155/2019/9049815>, Ding, S., Li, R. (2020) <doi:10.1155/2020/4564653>, Zeng, B., Li, C. (2018) <doi:10.1016/j.cie.2018.02.042>, Xie, N., Liu, S. (2015) <doi:10.1109/JSEE.2015.00013>, Zeng, X., Yan, S., He, F., Shi, Y. (2019) <doi:10.1016/j.apm.2019.11.032>.

r-arthistory 0.1.0
Channel: guix-cran
Location: guix-cran/packages/a.scm (guix-cran packages a)
Home page: https://github.com/saralemus7/arthistory
Licenses: Expat
Synopsis: Art History Textbook Data
Description:

Data from Gardner and Janson art history textbooks about both the artists featured in these books as well as their works. See Helen Gardner ("Art through the ages; an introduction to its history and significance," 1926, <https://find.library.duke.edu/catalog/DUKE000104481>. Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1980, ISBN: 0155037587). Fred S. Kleiner ("Gardnerâ s art through the ages: a global history," 2020, ISBN: 9781337630702). Horst de la Croix and Richard G. Tansey ("Gardner's art through the ages," 1986, ISBN: 0155037633). Helen Gardner ("Art through the ages; an introduction to its history and significance," 1936, <https://find.library.duke.edu/catalog/DUKE001199463>). Helen Gardner ("Art through the ages," 1948, <https://find.library.duke.edu/catalog/DUKE001199466>). Helen Gardner, revised under the editorship of Sumner M. Crosby ("Art through the ages," 1959, <https://find.library.duke.edu/catalog/DUKE001199469>). Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1975, ISBN: 0155037560). Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2013, ISBN: 9780495915423. Fred S. Kleiner, Christin J. Mamiya, Richard G. Tansey ("Gardnerâ s art through the ages," 2001, ISBN: 0155083155). Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2016, ISBN: 9781285837840). Fred S. Kleiner, Christin J. Mamiya ("Gardnerâ s art through the ages," 2005, ISBN: 0534640958). Helen Gardner, revised by Horst de la Croix and Richard G. Tansey ("Gardnerâ s Art through the ages," 1970, ISBN: 0155037528). Helen Gardner, Richard G. Tansey, Fred S. Kleiner ("Gardnerâ s Art through the ages," 1996, ISBN: 0155011413). Helen Gardner, Horst de la Croix, Richard G. Tansey, Diane Kirkpatrick ("Gardnerâ s Art through the ages," 1991, ISBN: 0155037692). Helen Gardner, Fred S. Kleiner ("Gardnerâ s Art through the ages: a global history," 2009, ISBN: 9780495093077). Davies, Penelope J.E., Walter B. Denny, Frima Fox Hofrichter, Joseph F. Jacobs, Ann S. Roberts, David L. Simon ("Jansonâ s history of art: the western tradition," 2007, ISBN: 0131934554). Davies, Penelope J.E., Walter B. Denny, Frima Fox Hofrichter, Joseph F. Jacobs, Ann S. Roberts, David L. Simon ("Jansonâ s history of art: the western tradition," 2011, ISBN: 9780205685172). H. W. Janson, Anthony F. Janson ("History of Art," 2001, ISBN: 0810934469). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1986, ISBN: 013389388). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1977, ISBN: 0810910527). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1969, <https://find.library.duke.edu/catalog/DUKE000005734>). H. W. Janson, Dora Jane Janson ("History of art: a survey of the major visual arts from the dawn of history to present day," 1963, <https://find.library.duke.edu/catalog/DUKE001521852>). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1991, ISBN: 0810934019). H. W. Janson, revised and expanded by Anthony F. Janson ("History of art," 1995, ISBN: 0810934213).

r-rnbeads-rn5 1.40.0
Propagated dependencies: r-genomicranges@1.60.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RnBeads.rn5
Licenses: GPL 3
Synopsis: RnBeads.rn5
Description:

Automatically generated RnBeads annotation package for the assembly rn5.

r-rnaseqpower 1.48.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RNASeqPower
Licenses: FSDG-compatible
Synopsis: Sample size for RNAseq studies
Description:

RNA-seq, sample size.

r-rmkdiscrete 0.2
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RMKdiscrete
Licenses: GPL 2+
Synopsis: Sundry Discrete Probability Distributions
Description:

Sundry discrete probability distributions and helper functions.

r-readstata13 0.11.0
Propagated dependencies: r-rcpp@1.0.14
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/sjewo/readstata13
Licenses: GPL 2 FSDG-compatible
Synopsis: Import 'Stata' Data Files
Description:

Function to read and write the Stata file format.

ruby-redcloth 4.3.2
Channel: guix
Location: gnu/packages/ruby-xyz.scm (gnu packages ruby-xyz)
Home page: http://redcloth.org
Licenses: Expat
Synopsis: Textile markup language parser for Ruby
Description:

RedCloth is a Ruby parser for the Textile markup language.

r-roxyglobals 1.0.0
Propagated dependencies: r-roxygen2@7.3.2 r-desc@1.4.3 r-codetools@0.2-20 r-brio@1.1.5
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/anthonynorth/roxyglobals
Licenses: Expat
Synopsis: 'Roxygen2' Global Variable Declarations
Description:

Generate utils::globalVariables() from roxygen2 @global and @autoglobal tags.

rust-esaxx-rs 0.1.10
Channel: guix
Location: gnu/packages/machine-learning.scm (gnu packages machine-learning)
Home page: https://github.com/Narsil/esaxx-rs
Licenses: ASL 2.0
Synopsis: Wrapper for sentencepiece's esaxxx library
Description:

This package provides a wrapper around sentencepiece's esaxxx library.

rust-rust-ini 0.20.0
Channel: glue
Location: glue/packages/mcfly.scm (glue packages mcfly)
Home page: https://github.com/zonyitoo/rust-ini
Licenses: Expat
Synopsis: An Ini configuration file parsing library in Rust
Description:

This package provides An Ini configuration file parsing library in Rust.

r-rnbeads-mm9 1.40.0
Propagated dependencies: r-genomicranges@1.60.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/RnBeads.mm9
Licenses: GPL 3
Synopsis: RnBeads.mm9
Description:

Automatically generated RnBeads annotation package for the assembly mm9.

r-pd-rat230-2 3.12.0
Propagated dependencies: r-s4vectors@0.46.0 r-rsqlite@2.3.11 r-oligoclasses@1.70.0 r-oligo@1.72.0 r-iranges@2.42.0 r-dbi@1.2.3 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/p.scm (guix-bioc packages p)
Home page: https://bioconductor.org/packages/pd.rat230.2
Licenses: Artistic License 2.0
Synopsis: Platform Design Info for The Manufacturer's Name Rat230_2
Description:

Platform Design Info for The Manufacturer's Name Rat230_2.

r-reporttools 1.1.4
Propagated dependencies: r-xtable@1.8-4
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: http://www.kasparrufibach.ch
Licenses: GPL 2+
Synopsis: Generate "LaTeX"" Tables of Descriptive Statistics
Description:

These functions are especially helpful when writing reports of data analysis using "Sweave".

r-rattoxfxcdf 2.18.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix-bioc
Location: guix-bioc/packages/r.scm (guix-bioc packages r)
Home page: https://bioconductor.org/packages/rattoxfxcdf
Licenses: LGPL 2.0+
Synopsis: rattoxfxcdf
Description:

This package provides a package containing an environment representing the RatToxFX.cdf file.

r-raymolecule 0.5.3
Propagated dependencies: r-rayvertex@0.12.0 r-rayrender@0.38.10 r-periodictable@0.1.2 r-magrittr@2.0.3 r-httr@1.4.7
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: http://www.raymolecule.com/
Licenses: GPL 3
Synopsis: Parse and Render Molecular Structures in 3D
Description:

Downloads and parses SDF (Structural Description Format) and PDB (Protein Database) files for 3D rendering.

r-rpostgresql 0.7-8
Dependencies: postgresql@14.13
Propagated dependencies: r-dbi@1.2.3
Channel: guix
Location: gnu/packages/cran.scm (gnu packages cran)
Home page: https://github.com/tomoakin/RPostgreSQL
Licenses: GPL 2
Synopsis: R interface to the PostgreSQL database system
Description:

This package provides a Database Interface (DBI) compliant driver for R to access PostgreSQL database systems.

ruby-railties 7.2.2.1
Propagated dependencies: ruby-actionpack@7.2.2.1 ruby-activesupport@7.2.2.1 ruby-method-source@1.0.0 ruby-rackup@1.0.1 ruby-rake@13.3.0 ruby-thor@1.2.2 ruby-webrick@1.8.1 ruby-zeitwerk@2.7.1
Channel: guix
Location: gnu/packages/rails.scm (gnu packages rails)
Home page: https://rubyonrails.org
Licenses: Expat
Synopsis: Rails internals, including application bootup and generators
Description:

railties provides the core Rails internals including handling application bootup, plugins, generators, and Rake tasks.

r-regexselect 1.0.0
Propagated dependencies: r-shinyjs@2.1.0 r-shiny@1.10.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://github.com/yonicd/regexSelect
Licenses: GPL 2 GPL 3
Synopsis: Regular Expressions in 'shiny' Select Lists
Description:

shiny extension that adds regular expression filtering capabilities to the choice vector of the select list.

r-rlogicalops 0.1
Propagated dependencies: r-stringr@1.5.1 r-rstackdeque@1.1.1
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=RLogicalOps
Licenses: GPL 2+ GPL 3+
Synopsis: Process Logical Operations
Description:

Processing logical operations such as AND/OR/NOT operations dynamically. It also handles nesting in the operations.

r-rkenyaforex 0.1.0
Channel: guix-cran
Location: guix-cran/packages/r.scm (guix-cran packages r)
Home page: https://cran.r-project.org/package=rKenyaForex
Licenses: Expat
Synopsis: Historical Data for Kenya Foreign Exchange Prices
Description:

Exchange rate for Kenya Shilling against other currencies, US DOLLAR, EURO, STERLING POUND, Tanzania Shilling, Uganda Shilling.

r-reactome-db 1.92.0
Propagated dependencies: r-annotationdbi@1.70.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/reactome.db/
Licenses: CC-BY 4.0
Synopsis: Annotation maps for reactome
Description:

This package provides a set of annotation maps for the REACTOME database, assembled using data from REACTOME.

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Total results: 30177