Rank-hazard plots Karvanen and Harrell (2009) <DOI:10.1002/sim.3591> visualize the relative importance of covariates in a proportional hazards model. The key idea is to rank the covariate values and plot the relative hazard as a function of ranks scaled to interval [0,1]. The relative hazard is plotted in respect to the reference hazard, which can bee.g. the hazard related to the median of the covariate.

SurveyCTO is a platform for mobile data collection in offline settings. The rsurveycto R package uses the SurveyCTO REST API <https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html> to read datasets and forms from a SurveyCTO server into R as data.table's and to download file attachments. The package also has limited support to write datasets to a server.

Studies of resilience in older adults employ a single-arm design where everyone experiences the stressor. The simplistic approach of regressing change versus baseline yields biased estimates due to regression-to-the-mean. This package provides a method to correct the bias. It also allows covariates to be included. The method implemented in the package is described in Varadhan, R., Zhu, J., and Bandeen-Roche, K (2024), Biostatistics 25(4): 1094-1111.

This is a tool for human B-cell context-specific transcriptional regulatory network. In addition, this package provides a human normal B-cells dataset for the examples in package viper.

ImageArray provides a framework for on-disk and in-memory image arrays, specifically for pyramidal images stored in HDF5, Zarr and life sciences image file formats (OME Bio-Formats).

This package implements methods to project single-cell RNA-seq data onto a reference atlas, enabling interpretation of unknown cell transcriptomic states in the the context of known, reference states.

This package provides a collection of all the estimation functions for spatial cross-sectional models (on lattice/areal data using spatial weights matrices) contained up to now in spdep.

This library provides methods to encode and decode Ascii85 binary-to-text encoding. The main modern use of Ascii85 is in PostScript and Portable Document Format (PDF) file formats.

Markaby allows writing HTML packages in pure Ruby. This is similar to the functionality provided by ERB, but without the mixture of HTML and additional ERB syntax.

pay-respects provides a shell helper to suggest correction for mistyped commands, with guix locate integration and an alias (default to f) to correct the previous command.

Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.

Facilitates plotting audiometric data (mostly) by preparing the coordinate system according to standards, given e. g. in American Speech-Language-Hearing Association (2005), <doi:10.1044/policy.GL2005-00014>.

Bootstraps and imputes incomplete datasets. Then performs inference on estimates obtained from analysing the imputed datasets as proposed by von Hippel and Bartlett (2021) <doi:10.1214/20-STS793>.

Several causal effects are measured using least squares regressions and basis function approximations. Backward and forward selection methods based on different criteria are used to select the basis functions.

An implementation of a Bayesian framework for the opinion poll based estimation of event probabilities in multi-party electoral systems (Bender and Bauer (2018) <doi:10.21105/joss.00606>).

Create interactive, linked plot maps for multivariate high-resolution spatio-temporal data, such as vehicle trajectories. You can explore the spatial, temporal, and multivariate aspects of the data simultaneously.

What is funnier than a dad joke? A dad joke in R! This package utilizes the API for <https://icanhazdadjoke.com> and returns dad jokes from several API endpoints.

Set of tools for detecting and analyzing Airborne Laser Scanning-derived Tropical Forest Canopy Gaps. Details were published in Silva and others (2019) <doi:10.1111/2041-210X.13211>.

This package implements three nonparametric two-sample tests for multivariate paired data and pair matching. Methods are described in the associated preprint: <doi:10.48550/arXiv.2007.01497>.

This package contains ten datasets used in the chapters and exercises of Paul, Alice (2023) "Health Data Science in R" <https://alicepaul.github.io/health-data-science-using-r/>.

This package provides a way to display word clouds in R. The word cloud is a html widget, so you can use it in interactive documents and shiny applications.

Allows an interactive assessment of the timing of interim analyses. The algorithm simulates both the recruitment and treatment/event phase of a clinical trial based on the package interim'.

Calculates and plots Handedness index (HI), absolute HI, mean HI and z-score which are commonly used indexes for the study of hand preference (laterality) in non-human primates.

Property based testing, inspired by the original QuickCheck'. This package builds on the property based testing framework provided by hedgehog and is designed to seamlessly integrate with testthat'.