GA4GHshiny package provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network.
This package was automatically created by package AnnotationForge version 1.11.21. The probe sequence data was obtained from http://www.affymetrix.com. The file name was YG-S98\_probe\_tab.
Manage author metadata and generate manuscript front matter. It produces title pages, acknowledgements, conflicts of interest, and contribution sections for large author lists, with helpers for validating and reading common spreadsheet formats.
Convert BCD (raw bytes) to decimal numbers and vice versa. BCD format is used to preserve decimals exactly, as opposed to the binary rounding errors inherent in "numeric" or "floating-point" formats.
Offers a set of objects tailored to simplify working with choice data. It enables the computation of choice probabilities and the likelihood of various types of choice models based on given data.
This package creates publication-ready causal diagrams using ggplot2'. Provides simple templates for common causal diagrams (e.g., mediating mechanisms and parallel pathways) with customizable labels, colors, fonts, and export-friendly defaults.
An interactive document on the topic of cluster analysis using rmarkdown and shiny packages. Runtime examples are provided in the package function as well as at <https://analyticmodels.shinyapps.io/ClusterAnalysis/>.
This package provides all electivity algorithms (including Vanderploeg and Scavia electivity) that were examined in Lechowicz (1982) <doi:10.1007/BF00349007>, plus the example data that were provided for moth resource utilisation.
Implementation of method for estimating excess mortality and other health related outcomes from weekly or daily count data described in Acosta and Irizarry (2021) "A Flexible Statistical Framework for Estimating Excess Mortality".
Discrete scales for the colorblind-friendly Okabe-Ito palette, including color', fill', and edge_colour'. ggokabeito provides ggplot2 and ggraph scales to easily use the Okabe-Ito palette in your data visualizations.
The goal of this package is to translate between different languages without any Google API authentication which is pain and you must pay for the key, This package is free and lightweight.
Three methods for Individual Tree Crowns (ITCs) delineation on remote sensing data: one is based on LiDAR data in x,y,z format and one on imagery data in raster format.
Facilitates access to the Comparative Legislators Database (CLD). The CLD includes political, sociodemographic, career, online presence, public attention, and visual information for over 67,000 contemporary and historical politicians from 16 countries.
This package provides exact and approximate algorithms for the horseshoe prior in linear regression models, which were proposed by Johndrow et al. (2020) <https://www.jmlr.org/papers/v21/19-536.html>.
This package performs variable selection in sparse negative binomial GLARMA (Generalised Linear Autoregressive Moving Average) models. For further details we refer the reader to the paper Gomtsyan (2023), <arXiv:2307.00929>.
Wald Test for nonlinear restrictions on model parameters and confidence intervals for nonlinear functions of parameters using delta-method. Applicable after ANY model, provided parameters estimates and their covariance matrix are available.
Uses provenance collected by rdtLite package or comparable tool to display information about input files, output files, and exchanged files for a single R script or a series of R scripts.
This package contains functions for math taught in school. A main focus is set to prime-calculation. The package also contains a dataset of all primes between 1 and 99,999,999.
Package including additional modules for interactive ShinyItemAnalysis application for the psychometric analysis of educational tests, psychological assessments, health-related and other types of multi-item measurements, or ratings from multiple raters.
Shiny module for easily sharing files between users. Admin can add, remove, edit and download file. User can only download file. It's also possible to manage files using R functions directly.
This package produces tables with descriptive statistics for continuous, categorical and dichotomous variables. It is largely based on the package gtsummary'; Sjoberg DD et al. (2021) <doi:10.32614/RJ-2021-053>.
Allows users to interactively select datasets, variables, and values within teal applications using a tidyselect'-style interface. Selected picks can be merged and transformed into analysis-ready data within teal modules.
This package provides functions to convert Rd to roxygen documentation. It can parse an Rd file to a list, create the roxygen documentation and update the original R script (e.g. the one containing the definition of the function) accordingly. This package also provides utilities that can help developers build packages using roxygen more easily. The formatR package can be used to reformat the R code in the examples sections so that the code will be more readable.
Reconstructs retinae by morphing a flat surface with cuts (a dissected flat-mount retina) onto a curvilinear surface (the standard retinal shape). It can estimate the position of a point on the intact adult retina to within 8 degrees of arc (3.6% of nasotemporal axis). The coordinates in reconstructed retinae can be transformed to visuotopic coordinates. For more details see Sterratt, D. C., Lyngholm, D., Willshaw, D. J. and Thompson, I. D. (2013) <doi:10.1371/journal.pcbi.1002921>.