This package provides functions for fitting data to a quiescent growth model, i.e. a growth process that involves members of the population who stop dividing or propagating.

Genotype plus genotype-by-environment (GGE) biplots rendered using ggplot2'. Provides a command line interface to all of the functionality contained within the archived package GGEBiplotGUI'.

This package provides functions for inference of ploidy from (Genotyping-by-sequencing) GBS data, including a function to infer allelic ratios and allelic proportions in a Bayesian framework.

This package contains functions to construct high-dimensional orthogonal maximin distance designs in two, four, eight, and sixteen levels from rotating the Kronecker product of sub-Hadamard matrices.

Tool for generating quality reports from cruncher outputs (and calculating series scores). The latest version of the cruncher can be downloaded here: <https://github.com/jdemetra/jwsacruncher/releases>.

This package provides extensions to the leaflet package to customize legends with images, text styling, orientation, sizing, and symbology and functions to create symbols to plot on maps.

This package contains a sample of the 2005 Grade 8 Mathematics data from the National Assessment of Educational Progress (NAEP). This data set is called the NAEP Primer.

Exports an enhanced version of the tools::parseLatex() function to handle LaTeX syntax more accurately. Also includes numerous functions for searching and modifying LaTeX source.

For a multivariate dataset with independent Poisson measurement error, calculates principal components of transformed latent Poisson means. T. Kenney, T. Huang, H. Gu (2019) <arXiv:1904.11745>.

This package provides a novel tool to identify candidate driver modules for predicting the prognosis of patients by integrating exclusive coverage of mutations with clinical characteristics in cancer.

This package provides classes to pre-process microarray gene expression data as part of the OOMPA collection of packages described at <http://oompa.r-forge.r-project.org/>.

This package provides an XY pad input for the Shiny framework. An XY pad is like a bivariate slider. It allows to pick up a pair of numbers.

An interactive Shiny application to perform fast parameter inference on dynamical systems (described by ordinary differential equations) using gradient matching. Please see the project page for more details.

Data filtering module for teal applications. Allows for interactive filtering of data stored in data.frame and MultiAssayExperiment objects. Also displays filtered and unfiltered observation counts.

Tabu search algorithm for binary configurations. A basic version of the algorithm as described by Fouskakis and Draper (2007) <doi:10.1111/j.1751-5823.2002.tb00174.x>.

Interface to TensorFlow Datasets, a high-level library for building complex input pipelines from simple, re-usable pieces. See <https://www.tensorflow.org/guide> for additional details.

This package provides a set of custom R Markdown templates for documents and presentations with the University of Illinois at Urbana-Champaign (UIUC) color scheme and identity standards.

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

This package provides mass-spectrometry based spatial proteomics data sets and protein complex separation data. It also contains the time course expression experiment from Mulvey et al. (2015).

The enrichplot package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analyses. All the visualization methods are developed based on ggplot2 graphics.

This package contains the Battenberg R package for subclonal copy number estimation, as described by Nik-Zainal et al.

U-Boot is a bootloader used mostly for ARM boards. It also initializes the boards (RAM etc).

This is a 32-bit build of U-Boot.

This package provides a unified interface to interact with Docker and Singularity containers. You can execute a command inside a container, mount a volume or copy a file.

This package defines the generic method extract and provides openMP support as needed in several packages like aws, adimpro, fmri, and dwi.