The XKCD color survey asked participants to name colours. Randall Munroe published the top thousand(roughly) names and their sRGB hex values. This package lets you use them.
Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.
This package provides a set of functions to generate high-resolution Venn,Vennpie plot,extract and combine details of these subsets with user datasets in data frame is available.
This package provides a small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode.
This package provides a collection of tools for building RAxML supermatrix using PHYLIP or aligned FASTA files. These functions will be useful for building large phylogenies using multiple markers.
The ammeter gem makes it easy to write specs for Rails generators. An existing user is rspec-rails, which uses ammeter to spec its own generators.
Promise is a Ruby implementation of the Promises/A+ specification. It provides 100% mutation coverage, tested on MRI 1.9, 2.0, 2.1, 2.2, Rubinius, and JRuby.
SyncroSim is a generalized framework for managing scenario-based datasets (<https://syncrosim.com/>). rsyncrosim provides an interface to SyncroSim'. Simulation models can be added to SyncroSim in order to transform these datasets, taking advantage of general features such as defining scenarios of model inputs, running Monte Carlo simulations, and summarizing model outputs. rsyncrosim requires SyncroSim 2.3.5 or higher (API documentation: <https://docs.syncrosim.com/>).
Studies of resilience in older adults employ a single-arm design where everyone experiences the stressor. The simplistic approach of regressing change versus baseline yields biased estimates due to regression-to-the-mean. This package provides a method to correct the bias. It also allows covariates to be included. The method implemented in the package is described in Varadhan, R., Zhu, J., and Bandeen-Roche, K (2023), Biostatistics (To appear).
This package provides a collection of tools to import and structure the (currently) single-season event, game-log, roster, and schedule data available from <https://www.retrosheet.org>. In particular, the event (a.k.a. play-by-play) files can be especially difficult to parse. This package does the parsing on those files, returning the requested data in the most practical R structure to use for sabermetric or other analyses.
SurveyCTO is a platform for mobile data collection in offline settings. The rsurveycto R package uses the SurveyCTO REST API <https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html> to read datasets and forms from a SurveyCTO server into R as data.table's and to download file attachments. The package also has limited support to write datasets to a server.
Rank-hazard plots Karvanen and Harrell (2009) <DOI:10.1002/sim.3591> visualize the relative importance of covariates in a proportional hazards model. The key idea is to rank the covariate values and plot the relative hazard as a function of ranks scaled to interval [0,1]. The relative hazard is plotted in respect to the reference hazard, which can bee.g. the hazard related to the median of the covariate.
Set chunk hooks for R Markdown documents <https://rmarkdown.rstudio.com/>, and improve user experience. For example, change units of figure sizes, benchmark chunks, and number lines on code blocks.
Could be used to obtain spatial depths, spatial ranks and outliers of multivariate random variables. Could also be used to visualize DD-plots (a multivariate generalization of QQ-plots).
This package provides functions for converting objects to scalars (vectors of length 1) and a more inclusive definition of data that can be interpreted as numbers (numeric and complex alike).
Adds flow maps to ggplot2 plots. The flow maps consist of ggplot2 layers which visualize the nodes as circles and the bilateral flows between the nodes as bidirectional half-arrows.
Bindings to libfluidsynth to parse and synthesize MIDI files. It can read MIDI into a data frame, play it on the local audio device, or convert into an audio file.
Download and process public domain works in the Project Gutenberg collection <https://www.gutenberg.org/>. Includes metadata for all Project Gutenberg works, so that they can be searched and retrieved.
Use GTFS (General Transit Feed Specification) data for routing from nominated start and end stations, for extracting isochrones', and travel times from any nominated start station to all other stations.
Makes it easy to extract and combine variables from the HILDA (Household, Income and Labour Dynamics in Australia) survey maintained by the Melbourne Institute <https://melbourneinstitute.unimelb.edu.au/hilda>.
R interface to access the web services of the ICES (International Council for the Exploration of the Sea) DATRAS trawl survey database <https://datras.ices.dk/WebServices/Webservices.aspx>.
Datasets and wrapper functions for tidyverse-friendly introductory linear regression, used in "Statistical Inference via Data Science: A ModernDive into R and the Tidyverse" available at <https://moderndive.com/>.
An API wrapper for the Monash University Probabilistic Footy Tipping Competition <https://probabilistic-footy.monash.edu/~footy/index.shtml>. Allows users to submit tips directly to the competition from R.
Implementation of two p-value combination techniques (inverse normal and Fisher methods). A vignette is provided to explain how to perform a meta-analysis from two independent RNA-seq experiments.