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This package provides functions that fit two modern education-based value-added models. One of these models is the quantile value-added model. This model permits estimating a school's value-added based on specific quantiles of the post-test distribution. Estimating value-added based on quantiles of the post-test distribution provides a more complete picture of an education institution's contribution to learning for students of all abilities. See Page, G.L.; San Martà n, E.; Orellana, J.; Gonzalez, J. (2017) <doi:10.1111/rssa.12195> for more details. The second model is a temporally dependent value-added model. This model takes into account the temporal dependence that may exist in school performance between two cohorts in one of two ways. The first is by modeling school random effects with a non-stationary AR(1) process. The second is by modeling school effects based on previous cohort's post-test performance. In addition to more efficiently estimating value-added, this model permits making statements about the persistence of a schools effectiveness. The standard value-added model is also an option.
Implementation of adaptive assessment procedures based on Knowledge Space Theory (KST, Doignon & Falmagne, 1999 <ISBN:9783540645016>) and Formal Psychological Assessment (FPA, Spoto, Stefanutti & Vidotto, 2010 <doi:10.3758/BRM.42.1.342>) frameworks. An adaptive assessment is a type of evaluation that adjusts the difficulty and nature of subsequent questions based on the test taker's responses to previous ones. The package contains functions to perform and simulate an adaptive assessment. Moreover, it is integrated with two Shiny interfaces, making it both accessible and user-friendly. The package has been partially funded by the European Union - NextGenerationEU and by the Ministry of University and Research (MUR), National Recovery and Resilience Plan (NRRP), Mission 4, Component 2, Investment 1.5, project â RAISE - Robotics and AI for Socio-economic Empowermentâ (ECS00000035).
This package provides functions of marginal mean and quantile regression models are used to analyze environmental exposure and biomonitoring data with repeated measurements and non-detects (i.e., values below the limit of detection (LOD)), as well as longitudinal exposure data that include non-detects and time-dependent covariates. For more details see Chen IC, Bertke SJ, Curwin BD (2021) <doi:10.1038/s41370-021-00345-1>, Chen IC, Bertke SJ, Estill CF (2024) <doi:10.1038/s41370-024-00640-7>, Chen IC, Bertke SJ, Dahm MM (2024) <doi:10.1093/annweh/wxae068>, and Chen IC (2025) <doi:10.1038/s41370-025-00752-8>.
To create maps from tiles, maptiles downloads, composes and displays tiles from a large number of providers (e.g. OpenStreetMap', Stadia', Esri', CARTO', or Thunderforest').
Calculates the expected/observed Fisher information and the bias-corrected maximum likelihood estimate(s) via Cox-Snell Methodology.
Conveniently log everything you type into the R console. Logs are are stored as tidy data frames which can then be analyzed using tidyverse style tools.
This package provides a mixed collection of useful and semi-useful diverse statistical functions, some of which may even be referenced in The R Primer book. See Ekstrøm, C. T. (2016). The R Primer. 2nd edition. Chapman & Hall.
Computation of an estimation of the long-memory parameters and the long-run covariance matrix using a multivariate model (Lobato (1999) <doi:10.1016/S0304-4076(98)00038-4>; Shimotsu (2007) <doi:10.1016/j.jeconom.2006.01.003>). Two semi-parametric methods are implemented: a Fourier based approach (Shimotsu (2007) <doi:10.1016/j.jeconom.2006.01.003>) and a wavelet based approach (Achard and Gannaz (2016) <doi:10.1111/jtsa.12170>).
Values below the limit of detection (LOD) are a problem in several fields of science, and there are numerous approaches for replacing the missing data. We present a new mathematical solution for maximum likelihood estimation that allows us to estimate the true values of the mean and standard deviation for normal distributions and is significantly faster than previous implementations. The article with the details was submitted to JSS and can be currently seen on <https://www2.arnes.si/~tverbo/LOD/Verbovsek_Sega_2_Manuscript.pdf>.
This package provides a lightweight package designed to facilitate statistical simulations through functional programming. It centralizes the simulation process into a single higher-order function, enhancing manageability and usability without adding overhead from external dependencies. The package includes ready-to-use functions for common simulation targets. A detailed example can be found on <https://github.com/ielbadisy/mcstatsim>.
This is an EM algorithm based method for imputation of missing values in multivariate normal time series. The imputation algorithm accounts for both spatial and temporal correlation structures. Temporal patterns can be modeled using an ARIMA(p,d,q), optionally with seasonal components, a non-parametric cubic spline or generalized additive models with exogenous covariates. This algorithm is specially tailored for climate data with missing measurements from several monitors along a given region.
This package implements a methodology for the design and analysis of dose-response studies that combines aspects of multiple comparison procedures and modeling approaches (Bretz, Pinheiro and Branson, 2005, Biometrics 61, 738-748, <doi: 10.1111/j.1541-0420.2005.00344.x>). The package provides tools for the analysis of dose finding trials as well as a variety of tools necessary to plan a trial to be conducted with the MCP-Mod methodology. Please note: The MCPMod package will not be further developed, all future development of the MCP-Mod methodology will be done in the DoseFinding R-package.
Distributions that are typically used for exposure rating in general insurance, in particular to price reinsurance contracts. The vignette shows code snippets to fit the distribution to empirical data. See, e.g., Bernegger (1997) <doi:10.2143/AST.27.1.563208> freely available on-line.
Estimation of interaction (i.e., moderation) effects between latent variables in structural equation models (SEM). The supported methods are: The constrained approach (Algina & Moulder, 2001). The unconstrained approach (Marsh et al., 2004). The residual centering approach (Little et al., 2006). The double centering approach (Lin et al., 2010). The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000). The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007) The constrained- unconstrained, residual- and double centering- approaches are estimated via lavaan (Rosseel, 2012), whilst the LMS- and QML- approaches are estimated via modsem it self. Alternatively model can be estimated via Mplus (Muthén & Muthén, 1998-2017). References: Algina, J., & Moulder, B. C. (2001). <doi:10.1207/S15328007SEM0801_3>. "A note on estimating the Jöreskog-Yang model for latent variable interaction using LISREL 8.3." Klein, A., & Moosbrugger, H. (2000). <doi:10.1007/BF02296338>. "Maximum likelihood estimation of latent interaction effects with the LMS method." Klein, A. G., & Muthén, B. O. (2007). <doi:10.1080/00273170701710205>. "Quasi-maximum likelihood estimation of structural equation models with multiple interaction and quadratic effects." Lin, G. C., Wen, Z., Marsh, H. W., & Lin, H. S. (2010). <doi:10.1080/10705511.2010.488999>. "Structural equation models of latent interactions: Clarification of orthogonalizing and double-mean-centering strategies." Little, T. D., Bovaird, J. A., & Widaman, K. F. (2006). <doi:10.1207/s15328007sem1304_1>. "On the merits of orthogonalizing powered and product terms: Implications for modeling interactions among latent variables." Marsh, H. W., Wen, Z., & Hau, K. T. (2004). <doi:10.1037/1082-989X.9.3.275>. "Structural equation models of latent interactions: evaluation of alternative estimation strategies and indicator construction." Muthén, L.K. and Muthén, B.O. (1998-2017). "'Mplus Userâ s Guide. Eighth Edition." <https://www.statmodel.com/>. Rosseel Y (2012). <doi:10.18637/jss.v048.i02>. "'lavaan': An R Package for Structural Equation Modeling.".
Various utilities to manipulate multivariate polynomials. The package is almost completely superceded by the spray and mvp packages, which are much more efficient.
This package contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals and tests, and generation of similarity matrices.
Utility functions for discovering and managing metadata associated with spatially unique "known locations". Applications include all fields of environmental monitoring (e.g. air and water quality) where data are collected at stationary sites.
Website generator with HTML summaries for predictive models. This package uses DALEX explainers to describe global model behavior. We can see how well models behave (tabs: Model Performance, Auditor), how much each variable contributes to predictions (tabs: Variable Response) and which variables are the most important for a given model (tabs: Variable Importance). We can also compare Concept Drift for pairs of models (tabs: Drifter). Additionally, data available on the website can be easily recreated in current R session. Work on this package was financially supported by the NCN Opus grant 2017/27/B/ST6/01307 at Warsaw University of Technology, Faculty of Mathematics and Information Science.
This package provides multigroup Kitagawa-Blinder-Oaxaca ('mKBO') decompositions, that allow for more than two groups. Each group is compared to the sample average. For more details see Thaning and Nieuwenhuis (2025) <doi:10.31235/osf.io/6twvj_v1>.
Simplifies Brazilian names phonetically using a custom metaphoneBR algorithm that preserves ending vowels. Useful for name matching processing preserving gender information carried generally by ending vowels in Portuguese. Mation (2025) <doi:10.6082/uchicago.15104>.
Provide a suite of functions for conducting and automating Latent Growth Modeling (LGM) in Mplus', including Growth Curve Model (GCM), Growth-Based Trajectory Model (GBTM) and Latent Class Growth Analysis (LCGA). The package builds upon the capabilities of the MplusAutomation package (Hallquist & Wiley, 2018) to streamline large-scale latent variable analyses. âMplusAutomation: An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus.â Structural Equation Modeling, 25(4), 621â 638. <doi:10.1080/10705511.2017.1402334> The workflow implemented in this package follows the recommendations outlined in Van Der Nest et al. (2020). â An Overview of Mixture Modeling for Latent Evolutions in Longitudinal Data: Modeling Approaches, Fit Statistics, and Software.â Advances in Life Course Research, 43, Article 100323. <doi:10.1016/j.alcr.2019.100323>.
Implementations of MOSUM-based statistical procedures and algorithms for detecting multiple changes in the mean. This comprises the MOSUM procedure for estimating multiple mean changes from Eichinger and Kirch (2018) <doi:10.3150/16-BEJ887> and the multiscale algorithmic extension from Cho and Kirch (2022) <doi:10.1007/s10463-021-00811-5>, as well as the bootstrap procedure for generating confidence intervals about the locations of change points as proposed in Cho and Kirch (2022) <doi:10.1016/j.csda.2022.107552>. See also Meier, Kirch and Cho (2021) <doi:10.18637/jss.v097.i08> which accompanies the R package.
Finds the Maximum Likelihood (ML) Estimate of the mean vector and variance-covariance matrix for multivariate normal data with missing values.
This package provides the biggest amount of statistical measures in the whole R world. Includes measures of regression, (multiclass) classification and multilabel classification. The measures come mainly from the mlr package and were programed by several mlr developers.