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This package provides the function to calculate the kernel-lasso expansion, Z-score, and max-min-scale standardization.It can increase the dimension of existed dataset and remove abundant features by lasso. Z Dai, L Jiayi, T Gong, C Wang (2021) <doi:10.1088/1742-6596/1955/1/012047>.
This package provides a progress bar similar to dplyr that can write progress out to a variety of locations, including stdout(), stderr(), or from file(). Useful when using knitr or rmarkdown', and you still want to see progress of calculations in the terminal.
Wait for a single key press at the R prompt. This works in terminals, but does not currently work in the Windows GUI', the OS X GUI ('R.app'), in Emacs ESS', in an Emacs shell buffer or in R Studio'. In these cases keypress stops with an error message.
Kernel smoothing for Wishart random matrices described in Daayeb, Khardani and Ouimet (2025) <doi:10.48550/arXiv.2506.08816>, Gaussian and log-Gaussian models using least square or likelihood cross validation criteria for optimal bandwidth selection.
To fit the kernel semi-parametric model and its extensions. It allows multiple kernels and unlimited interactions in the same model. Coefficients are estimated by maximizing a penalized log-likelihood; penalization terms and hyperparameters are estimated by minimizing leave-one-out error. It includes predictions with confidence/prediction intervals, statistical tests for the significance of each kernel, a procedure for variable selection and graphical tools for diagnostics and interpretation of covariate effects. Currently it is implemented for continuous dependent variables. The package is based on the paper of Liu et al. (2007), <doi:10.1111/j.1541-0420.2007.00799.x>.
Package implements Kernel-based Regularized Least Squares (KRLS), a machine learning method to fit multidimensional functions y=f(x) for regression and classification problems without relying on linearity or additivity assumptions. KRLS finds the best fitting function by minimizing the squared loss of a Tikhonov regularization problem, using Gaussian kernels as radial basis functions. For further details see Hainmueller and Hazlett (2014).
Control your keyboard and mouse with R code by simulating key presses and mouse clicks. The input simulation is implemented with the Windows API.
This package provides tools for applying Krippendorff's Alpha methodology <DOI:10.1080/19312450709336664>. Both the customary methodology and Hughes methodology <DOI:10.48550/arXiv.2210.13265> are supported, the former being preferred for larger datasets, the latter for smaller datasets. The framework supports common and user-defined distance functions, and can accommodate any number of units, any number of coders, and missingness. Interval estimation can be done in parallel for either methodology.
Quality of life functions for interactive programming. Shortcuts for common combinations of functions or different default arguments. Not to be used in production level scripts, but useful for exploring and quickly manipulating data for easy analysis. Also imports a variety of packages to facilitate the installation of those imported packages on the host machine.
This package provides a spatial smoothing algorithm based on convolutions of finite rectangular kernels that provides sharp resolution in the presence of high levels of noise.
Miscellaneous functions and data used in psychological research and teaching. Keng currently has a built-in dataset depress, and could (1) scale a vector; (2) compute the cut-off values of Pearson's r with known sample size; (3) test the significance and compute the post-hoc power for Pearson's r with known sample size; (4) conduct a priori power analysis and plan the sample size for Pearson's r; (5) compare lm()'s fitted outputs using R-squared, f_squared, post-hoc power, and PRE (Proportional Reduction in Error, also called partial R-squared or partial Eta-squared); (6) calculate PRE from partial correlation, Cohen's f, or f_squared; (7) conduct a priori power analysis and plan the sample size for one or a set of predictors in regression analysis; (8) conduct post-hoc power analysis for one or a set of predictors in regression analysis with known sample size; (9) randomly pick numbers for Chinese Super Lotto and Double Color Balls; (10) assess course objective achievement in Outcome-Based Education.
Retrieve data from kintone (<https://www.kintone.com/>) via its API. kintone is an enterprise application platform.
This package provides a collection of personal helper functions to avoid redundancy in the spirit of the "Don't repeat yourself" principle of software development (<https://en.wikipedia.org/wiki/Don%27t_repeat_yourself>).
Algorithms of distance-based k-medoids clustering: simple and fast k-medoids, ranked k-medoids, and increasing number of clusters in k-medoids. Calculate distances for mixed variable data such as Gower, Podani, Wishart, Huang, Harikumar-PV, and Ahmad-Dey. Cluster validation applies internal and relative criteria. The internal criteria includes silhouette index and shadow values. The relative criterium applies bootstrap procedure producing a heatmap with a flexible reordering matrix algorithm such as complete, ward, or average linkages. The cluster result can be plotted in a marked barplot or pca biplot.
This package provides tools for estimate (joint) cumulants and (joint) products of cumulants of a random sample using (multivariate) k-statistics and (multivariate) polykays, unbiased estimators with minimum variance. Tools for generating univariate and multivariate Faa di Bruno's formula and related polynomials, such as Bell polynomials, generalized complete Bell polynomials, partition polynomials and generalized partition polynomials. For more details see Di Nardo E., Guarino G., Senato D. (2009) <arXiv:0807.5008>, <arXiv:1012.6008>.
This package implements a quantified approach to the Kraljic Matrix (Kraljic, 1983, <https://hbr.org/1983/09/purchasing-must-become-supply-management>) for strategically analyzing a firmâ s purchasing portfolio. It combines multi-objective decision analysis to measure purchasing characteristics and uses this information to place products and services within the Kraljic Matrix.
Wrapper for Kobotoolbox APIs ver 2 mentioned at <https://support.kobotoolbox.org/api.html>, to download data from Kobotoolbox to R. Small and simple package that adds immense convenience for the data professionals using Kobotoolbox'.
Kernel Learning Integrative Clustering (KLIC) is an algorithm that allows to combine multiple kernels, each representing a different measure of the similarity between a set of observations. The contribution of each kernel on the final clustering is weighted according to the amount of information carried by it. As well as providing the functions required to perform the kernel-based clustering, this package also allows the user to simply give the data as input: the kernels are then built using consensus clustering. Different strategies to choose the best number of clusters are also available. For further details please see Cabassi and Kirk (2020) <doi:10.1093/bioinformatics/btaa593>.
This function performs the two-sample Kuiper test to assess the anomaly of continuous, one-dimensional probability distributions. References used for this method are (1). Kuiper, N. H. (1960). <DOI:10.1016/S1385-7258(60)50006-0> and (2). Paltani, S. (2004). <DOI:10.1051/0004-6361:20034220>.
This package implements k-means like blockmodeling of one-mode and linked networks as presented in Žiberna (2020) <doi:10.1016/j.socnet.2019.10.006>. The development of this package is financially supported by the Slovenian Research Agency (<https://www.arrs.si/>) within the research programs P5-0168 and the research projects J7-8279 (Blockmodeling multilevel and temporal networks) and J5-2557 (Comparison and evaluation of different approaches to blockmodeling dynamic networks by simulations with application to Slovenian co-authorship networks).
The kernelized version of principal component analysis (KPCA) has proven to be a valid nonlinear alternative for tackling the nonlinearity of biological sample spaces. However, it poses new challenges in terms of the interpretability of the original variables. kpcaIG aims to provide a tool to select the most relevant variables based on the kernel PCA representation of the data as in Briscik et al. (2023) <doi:10.1186/s12859-023-05404-y>. It also includes functions for 2D and 3D visualization of the original variables (as arrows) into the kernel principal components axes, highlighting the contribution of the most important ones.
The computational complexity of the implemented algorithm for Kendall's correlation is O(n log(n)), which is faster than the base R implementation with a computational complexity of O(n^2). For small vectors (i.e., less than 100 observations), the time difference is negligible. However, for larger vectors, the speed difference can be substantial and the numerical difference is minimal. The references are Knight (1966) <doi:10.2307/2282833>, Abrevaya (1999) <doi:10.1016/S0165-1765(98)00255-9>, Christensen (2005) <doi:10.1007/BF02736122> and Emara (2024) <https://learningcpp.org/>. This implementation is described in Vargas Sepulveda (2025) <doi:10.1371/journal.pone.0326090>.
This package provides an implementation of a kernel-embedding of probability test for elliptical distribution. This is an asymptotic test for elliptical distribution under general alternatives, and the location and shape parameters are assumed to be unknown. Some side-products are posted, including the transformation between rectangular and polar coordinates and two product-type kernel functions. See Tang and Li (2024) <doi:10.48550/arXiv.2306.10594> for details.
Understanding the current status of forest resources is essential for monitoring changes in forest ecosystems and generating related statistics. In South Korea, the National Forest Inventory (NFI) surveys over 4,500 sample plots nationwide every five years and records 70 items, including forest stand, forest resource, and forest vegetation surveys. Many researchers use NFI as the primary data for research, such as biomass estimation or analyzing the importance value of each species over time and space, depending on the research purpose. However, the large volume of accumulated forest survey data from across the country can make it challenging to manage and utilize such a vast dataset. To address this issue, we developed an R package that efficiently handles large-scale NFI data across time and space. The package offers a comprehensive workflow for NFI data analysis. It starts with data processing, where read_nfi() function reconstructs NFI data according to the researcher's needs while performing basic integrity checks for data quality.Following this, the package provides analytical tools that operate on the verified data. These include functions like summary_nfi() for summary statistics, diversity_nfi() for biodiversity analysis, iv_nfi() for calculating species importance value, and biomass_nfi() and cwd_biomass_nfi() for biomass estimation. Finally, for visualization, the tsvis_nfi() function generates graphs and maps, allowing users to visualize forest ecosystem changes across various spatial and temporal scales. This integrated approach and its specialized functions can enhance the efficiency of processing and analyzing NFI data, providing researchers with insights into forest ecosystems. The NFI Excel files (.xlsx) are not included in the R package and must be downloaded separately. Users can access these NFI Excel files by visiting the Korea Forest Service Forestry Statistics Platform <https://kfss.forest.go.kr/stat/ptl/article/articleList.do?curMenu=11694&bbsId=microdataboard> to download the annual NFI Excel files, which are bundled in .zip archives. Please note that this website is only available in Korean, and direct download links can be found in the notes section of the read_nfi() function.