Fivemat is a MiniTest/RSpec/Cucumber formatter that gives each test file its own line of dots during testing. It aims to provide test output that is neither too verbose nor too minimal.

Rofi is a minimalist application launcher. It memorizes which applications you regularly use and also allows you to search for an application by name. This package, rofi-wayland, provides additional wayland support.

This package provides functions to convert Rd to roxygen documentation. It can parse an Rd file to a list, create the roxygen documentation and update the original R script (e.g. the one containing the definition of the function) accordingly. This package also provides utilities that can help developers build packages using roxygen more easily. The formatR package can be used to reformat the R code in the examples sections so that the code will be more readable.

This package provides a game for two players: Who gets first four in a row (horizontal, vertical or diagonal) wins. As board game published by Milton Bradley, designed by Howard Wexler and Ned Strongin.

This package provides tools, helpers and data structures for developing models and time series functions for fable and extension packages. These tools support a consistent and tidy interface for time series modelling and analysis.

An implementation of the Otsu's Image Segmentation Method described in the paper: "A C++ Implementation of Otsu's Image Segmentation Method". The algorithm is explained at <doi:10.5201/ipol.2016.158>.

This package provides a simple and trustworthy methodology for the analysis of misreported continuous time series. See Moriña, D, Fernández-Fontelo, A, Cabaña, A, Puig P. (2021) <arXiv:2003.09202v2>.

Sends queries to a specified Neo4J graph database, capturing results in a dataframe where appropriate. Other useful functions for the importing and management of data on the Neo4J server and basic local server admin.

Efficiency and productivity indices are measured using this package. This package contains functions for measuring efficiency and productivity of decision making units (DMUs) under the framework of Data Envelopment Analysis (DEA) and its variations.

Estimation of value and hedging strategy of call and put options, based on optimal hedging and Monte Carlo method, from Chapter 3 of Statistical Methods for Financial Engineering', by Bruno Remillard, CRC Press, (2013).

Summarises key information in data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Assess suitability to perform specific epidemiological studies and explore the different domains to obtain feasibility counts and trends.

This package provides a tool that can be customized to aid in the clean up of ecological data collected using quadrats and can crop quadrats to ensure comparability between quadrats collected under different methodologies.

This package provides functions to plot QTL (quantitative trait loci) analysis results and related diagnostics. Part of qtl2', an upgrade of the qtl package to better handle high-dimensional data and complex cross designs.

We integrated the common analysis methods utilized in single cell RNA sequencing data, which included cluster method, principal components analysis (PCA), the filter of differentially expressed genes, pathway enrichment analysis and correlated analysis methods.

Estimation of model parameters for marked Hawkes process. Accounts for missing data in the estimation of the parameters. Technical details found in (Tucker et al., 2019 <DOI:10.1016/j.spasta.2018.12.004>).

Seamless and standardized interaction with data exported from the clinical data management system (CDMS) secuTrial'<https://www.secutrial.com>. The primary data export the package works with is a standard non-rectangular export.

This package provides a tidy approach to spatial network analysis, in the form of classes and functions that enable a seamless interaction between the network analysis package tidygraph and the spatial analysis package sf'.

Trust region algorithm for nonlinear optimization. Efficient when the Hessian of the objective function is sparse (i.e., relatively few nonzero cross-partial derivatives). See Braun, M. (2014) <doi:10.18637/jss.v060.i04>.

This package provides API access to the Walmart Open API <https://developer.walmartlabs.com/>, that contains data about stores, Value of the day and products which includes names, sale prices, shipping rates and taxonomies.

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

fourDNData is a data package giving programmatic access to Hi-C contact matrices uniformly processed by the [4DN consortium](https://www.4dnucleome.org/). The matrices are available in the multi-resolution `.mcool` format.

Microarray quality assessment is a major concern of microarray analysts. This package provides some simple approaches to in silico creation of quality problems in CEL-level data to help evaluate performance of quality metrics.

This package provides functions for fitting the entire solution path of the Elastic-Net and also provides functions for estimating sparse Principal Components. The Lasso solution paths can be computed by the same function.

This package provides the URL checking tools available in R 4.1+ as a package for earlier versions of R. It also uses concurrent requests so can be much faster than the serial versions.