Semantic Versions allow for standardized management versions. This package implements semantic versioning handling in R. using R6 to create a mutable object that can handle deciphering and checking versions.
Full listing of UK baby names occurring more than three times per year between 1974 and 2020, and rankings of baby name popularity by decade from 1904 to 1994.
Functionality for creating phase portraits of functions in the complex number plane. Works with R base graphics, whose full functionality is available. Parallel processing is used for optimum performance.
We develop the entire solution paths for ROC-SVM presented by Rakotomamonjy. The ROC-SVM solution path algorithm greatly facilitates the tuning procedure for regularization parameter, lambda in ROC-SVM by avoiding grid search algorithm which may be computationally too intensive. For more information on the ROC-SVM, see the report in the ROC Analysis in AI workshop(ROCAI-2004) : Hernà ndez-Orallo, José, et al. (2004) <doi:10.1145/1046456.1046489>.
This package provides methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintenance for package developers. For example, generic functions are created automatically, if missing, and naming conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future may want to migrate to S4.
Use rmarkdown partials, also know as child documents in knitr', so you can make components for HTML, PDF, and Word documents. The package provides various helper functions to make certain functions easier. You may want to use this package, if you want to flexibly summarise objects using a combination of figures, tables, text, and HTML widgets. Unlike HTML widgets, the output is Markdown and can hence be turn into other output formats than HTML.
Changepoint implements various mainstream and specialised changepoint methods. These methods are suitable for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included as well.
This Common Lisp library focuses on the small set of basic color manipulations (lightening, compliments, etc.) you might use to generate a color palette for a GUI or web page.
HighLine provides a high-level IO library that provides validation, type conversion, and more for command-line interfaces. HighLine also includes a menu system for providing multiple options to the user.
Sanitize is a whitelist-based HTML and CSS sanitizer. Given a list of acceptable elements, attributes, and CSS properties, Sanitize will remove all unacceptable HTML and/or CSS from a string.
Maxitest is a wrapper around Minitest with extra functionality such as timeouts, an mtest executable that can run tests by line number, support for interrupted tests, better backtraces, and more.
The Polyglot library allows a Ruby module to register a loader for the file type associated with a filename extension, and it augments require to find and load matching files.
Opens and imports log files from Angstrom Engineering Thermal Evaporator and extracts basic characteristics, such as base pressure, time of the evaporation. It can visualize the deposition observables for review.
Extend the bigmemory package with table', tapply', and split support for big.matrix objects. The functions may also be used with native R matrices for improving speed and memory-efficiency.
Conducts various numerical analyses and simulations in population genetics and evolutionary theory, primarily for the purpose of teaching (and learning about) key concepts in population & quantitative genetics, and evolutionary theory.
MHCnuggets (<https://github.com/KarchinLab/mhcnuggets>) is a Python tool to predict MHC class I and MHC class II epitopes. This package allows one to call MHCnuggets from R.
Calculate the optimal vertex partition of a graph using the persistence as objective function. These subroutines have been used in Avellone et al. <doi:10.1007/s10288-023-00559-z>.
This package provides a collection of color palettes inspired by the enormous diversity of skin colors in Neotropical poison frog species. Suitable for use with ggplot2 and base R graphics.
Datasets from Yotov, et al. (2016, ISBN:978-92-870-4367-2) "An Advanced Guide to Trade Policy Analysis" and functions to report regression summaries with clustered robust standard errors.
Estimation of observation-specific weights for incomplete longitudinal data and bootstrap procedure for weighted quantile regressions. See Jacqmin-Gadda, Rouanet, Mba, Philipps, Dartigues (2020) for details <doi:10.1177/0962280220909986>.
This package provides
pseudo random generators, such as general linear congruential generators, multiple recursive generators and generalized feedback shift register (SF-Mersenne Twister algorithm and WELL generators)
quasi random generators, such as the Torus algorithm, the Sobol sequence, the Halton sequence (including the Van der Corput sequence), and
some generator tests: the gap test, the serial test, the poker test.
See e.g. Gentle (2003) doi:10.1007/b97336.
This package implements a self-sufficient reader and writer for flat Parquet files. It can read most Parquet data types. It can write many R data types, including factors and temporal types.
This package extends mlr3 with filter methods for feature selection. Besides standalone filter methods built-in methods of any machine-learning algorithm are supported. Partial scoring of multivariate filter methods is supported.
Compute time-dependent ROC curve from censored survival data using Kaplan-Meier (KM) or Nearest Neighbor Estimation (NNE) method of Heagerty, Lumley & Pepe (Biometrics, Vol 56 No 2, 2000, PP 337-344)