Computes the probability density function, the cumulative density function, quantile function, random numbers and measures of inference for the following families exponentiated generalized gull alpha power family, exponentiated gull alpha powerfamily, gull alpha power family.

Utilizes the Black-Scholes-Merton option pricing model to calculate key option analytics and perform graphical analysis of various option strategies. Provides functions to calculate the option premium and option greeks of European-style options.

This package provides functions to simplify the PatentsView API (<https://patentsview.org/apis/purpose>) query language, send GET and POST requests to the API's seven endpoints, and parse the data that comes back.

Small self-contained plots for use in larger plots or to delegate plotting in other functions. Also contains a number of alternative color palettes and HSL color space based tools to modify colors or palettes.

Provide summary table of daily physical activity and per-person/grouped heat map for accelerometer data from SenseWear Armband. See <https://templehealthcare.wordpress.com/the-sensewear-armband/> for more information about SenseWear Armband.

This package provides a screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

Asynchronous Reliable Extensible Sleek RPC Server for Guile. It's based on nREPL protocol and can be used for programmable interactions with a running guile processes, for implementing REPLs, IDEs, test runners or other tools.

This package translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

TrackViewer offers multi-omics analysis with web based tracks and lollipops. Visualize mapped reads along with annotation as track layers for NGS datasets such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

The file processes to produce (real) rulers; the author suggests printing them on transparent plastic and trimming for use as a real ruler. The rule widths are 0.05mm, which can be challenging for (old) laser printers.

This package allows users to perform DE analysis using multiple algorithms. It seeks consensus from multiple methods. Currently it supports "Voom", "EdgeR" and "DESeq". It uses RUV-seq (optional) to remove unwanted sources of variation.

An easy and fast way to visualize and profile the high-throughput IP data. This package generates the meta gene profile and other profiles. These profiles could provide valuable information for understanding the IP experiment results.

This package implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Fetching data from Amazon Kinesis Streams using the Java-based MultiLangDaemon interacting with Amazon Web Services ('AWS') for easy stream processing from R. For more information on Kinesis', see <https://aws.amazon.com/kinesis>.

This package provides an htmlwidgets interface to apexcharts.js'. Apexcharts is a modern JavaScript charting library to build interactive charts and visualizations with simple API. Apexcharts examples and documentation are available here: <https://apexcharts.com/>.

This package provides a selection of distances measures for bioinformatics data. Other important distance measures for bioinformatics data are selected from the R package parallelDist'. A special distance measure for the Gene Ontology is available.

Finite Population bootstrap algorithms to estimate the variance of the Horvitz-Thompson estimator for single-stage sampling. For a survey of bootstrap methods for finite populations, see Mashreghi et Al. (2016) <doi:10.1214/16-SS113>.

Find the numbers of test tubes that can be balanced in centrifuge rotors and show various ways to load them. Refer to Pham (2020) <doi:10.31224/osf.io/4xs38> for more information on package functionality.

Using polygenic scores (PGS, or PRS/GRS for binary outcomes), this package allows to investigate shared predisposition between different conditions, and do fast association analysis, export plots and views of the PGS distribution using ggplot2 object.

Computation of decision intervals (H) and average run lengths (ARL) for CUSUM charts. Details of the method are seen in Hawkins and Olwell (2012): Cumulative sum charts and charting for quality improvement, Springer Science & Business Media.

Various recursive two-stage models to address the endogeneity issue of treatment variables in observational study or mediators in experiments. The details of the models are discussed in Peng (2023) <doi:10.1287/isre.2022.1113>.

Prints out information about the R working environment (system, R version,loaded and attached packages and versions) from a single function "env_doc()". Optionally adds information on git repository, tags, commits and remotes (if available).

Visualise the results of F test to compare two variances, Student's t-test, test of equal or given proportions, Pearson's chi-squared test for count data and test for association/correlation between paired samples.

Affords an alternative, vector-based syntax to lavaan', as well as other convenience functions such as naming paths and defining indirect links automatically, in addition to convenience formatting optimized for a publication and script sharing workflow.