Bayes factors and posterior probabilities in Linear models, aimed at provide a formal Bayesian answer to testing and variable selection problems.

Concatenation of multiple sequence alignments based on a correspondence table that can be edited in Excel <doi:10.5281/zenodo.5130603>.

This package provides two variants of multiple correspondence analysis (ca): multiple ca and ordered multiple ca via orthogonal polynomials of Emerson.

Core functions as well as diagnostic and calibration tools for combining matching and linear regression for causal inference in observational studies.

This package creates aesthetically pleasing and informative pie charts, ring charts, bar charts and box plots with colors, patterns, and images.

This package provides functions to convert data structures among the qtl2', qtl', and DOQTL packages for mapping quantitative trait loci (QTL).

The computer program is an efficient igneous norm algorithm and rock classification system written in R but run as shiny app.

rtracklayer is an extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

This package provides functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.

Recursive lists in the form of R objects, JSON', and XML', for use in teaching and examples. Examples include color palettes, Game of Thrones characters, GitHub users and repositories, music collections, and entities from the Star Wars universe. Data from the gapminder package is also included, as a simple data frame and in nested and split forms.

This is a collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

This package provides C-based tools for converting large scatterplot data to rasters. It speeds up plotting of data with millions of points.

BOOST-RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracking VM.

This package provides a Partial native implementation of the liquid ruby gem in C that makes it operate about three times faster.

This package extends the String class and adds a ColorizedString with methods to set text color, background color, and text effects.

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Raw and processed versions of the data from De Cock (2011) <http://ww2.amstat.org/publications/jse> are included in the package.

Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the ade4 package.

Latent and Stochastic Block Model estimation by a Variational EM algorithm. Various probability distribution are provided (Bernoulli, Poisson...), with or without covariates.

Create R functions that interact with OAuth2 Google APIs <https://developers.google.com/apis-explorer/> easily, with auto-refresh and Shiny compatibility.

Analysis of stock data ups and downs trend, the stock technical analysis indicators function have trend line, reversal pattern and market trend.

Extends the mlr3 ML framework with methods for spatial objects. Data storage and prediction are supported for packages terra', raster and stars'.

Extends the classical Newman studentized range statistic in various ways that can be applied to genome-scale transcriptomic or other expression data.

This package contains a dataset of words used in 15.000 randomly extracted pages from the Portuguese Wikipedia (<https://pt.wikipedia.org/>).