Makes easier the creation of R package or research compendium (i.e. a predefined files/folders structure) so that users can focus on the code/analysis instead of wasting time organizing files. A full ready-to-work structure is set up with some additional features: version control, remote repository creation, CI/CD configuration (check package integrity under several OS, test code with testthat', and build and deploy website using pkgdown'). This package heavily relies on the R packages devtools and usethis and follows recommendations made by Wickham H. (2015) <ISBN:9781491910597> and Marwick B. et al. (2018) <doi:10.7287/peerj.preprints.3192v2>.

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

This package creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimics many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates.

This package provides methods operating on rows and columns of matrices, e.g. rowMedians(), rowRanks(), and rowSds(). There are also some vector-based methods, e.g. binMeans(), madDiff() and weightedMedians(). All methods have been optimized for speed and memory usage.

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

The "clang-runtime" library provides the implementations of run-time functions for C and C++ programs. It also provides header files that allow C and C++ source code to interface with the "sanitization" passes of the clang compiler. In LLVM this library is called "compiler-rt".

Sorcerer generates Ruby code from a Ripper-like abstract syntax tree (i.e. S-Expressions). Sorcerer is targeted mainly at small snippets of Ruby code, expressible in a single line. Longer examples may be re-sourced, but they will be rendered in a single-line format.

Net::SFTP is a pure Ruby implementation of the SFTP protocol (specifically, versions 1 through 6 of the SFTP protocol). Note that this is the “Secure File Transfer Protocol”, typically run over an SSH connection, and has nothing to do with the FTP protocol.

Interact with the Brandwatch API <https://developers.brandwatch.com/docs>. Allows you to authenticate to the API and obtain data for projects, queries, query groups tags and categories. Also allows you to directly obtain mentions and aggregate data for a specified query or query group.

Create simplex plots to visualize the similarity between single-cells and selected clusters in a 1-/2-/3-simplex space. Velocity information can be added as an additional layer. See Liu J, Wang Y et al (2023) <doi:10.1093/bioinformatics/btaf119> for more details.

Data package for the supplementary data in Prem et al. (2017) <doi:10.1371/journal.pcbi.1005697> and Prem et al. <doi:10.1371/journal.pcbi.1009098>. Provides easy access to contact data for 177 countries, for use in epidemiological, demographic or social sciences research.

This package provides functional tools such as fmap(), fwalk(), and fapply() to iterate over vectors, data frames, or grouped data with optional parallelism and real-time progress tracking. Designed for readable and reproducible workflows, including support for Monte Carlo simulations and benchmarking.

Compute bivariate dependence measures and perform bivariate competing risks analysis under the generalized Farlie-Gumbel-Morgenstern (FGM) copula. See Shih and Emura (2018) <doi:10.1007/s00180-018-0804-0> and Shih and Emura (2019) <doi:10.1007/s00362-016-0865-5> for details.

Calculation of key bacterial growth curve parameters using fourth degree polynomial functions. Six growth curve parameters are provided including peak growth rate, doubling time, lag time, maximum growth, and etc. ipolygrowth takes time series data from individual biological samples (with technical replicates) or multiple samples.

This package provides user tokens for ICES web services that require authentication and authorization. Web services covered by this package are ICES VMS database, the ICES DATSU web services, and the ICES SharePoint site <https://www.ices.dk/data/tools/Pages/WebServices.aspx>.