This package provides tools to interface with Cytobank's API via R, organized by endpoints that represent various areas of Cytobank functionality. Learn more about Cytobank at <https://www.beckman.com/flow-cytometry/software>.

Distributes samples in batches while making batches homogeneous according to their description. Allows for an arbitrary number of variables, both numeric and categorical. For quality control it provides functions to subset a representative sample.

Simulates and fits semiparametric shared frailty models under a wide range of frailty distributions using a consistent and asymptotically-normal estimator. Currently supports: gamma, power variance function, log-normal, and inverse Gaussian frailty models.

D&D alignment charts show 9 boxes with values for good through evil and values for chaotic through lawful. This package easily creates these alignment charts from user-provided image paths and alignment values.

This package provides a word cloud text geom for ggplot2'. Texts are placed so that they do not overlap as in ggrepel'. The algorithm used is a variation around the one of wordcloud2.js'.

Some methods to manipulate HDF5 files, extending the hdf5r package. Reading and writing R objects to HDF5 formats follow the specification of AnnData <https://anndata.readthedocs.io/en/latest/fileformat-prose.html>.

This package provides a wrapper for the Highcharts library including shortcut functions to plot R objects. Highcharts <https://www.highcharts.com/> is a charting library offering numerous chart types with a simple configuration syntax.

This package implements the classical Jacobi algorithm for the eigenvalues and eigenvectors of a real symmetric matrix, both in pure R and in C++ using Rcpp'. Mainly as a programming example for teaching purposes.

Helps to render interlinear glossed linguistic examples in html rmarkdown documents and then semi-automatically compiles the list of glosses at the end of the document. It also provides a database of linguistic glosses.

Combine the air quality data analysis methods of openair with the JavaScript Leaflet (<https://leafletjs.com/>) library. Functionality includes plotting site maps, "directional analysis" figures such as polar plots, and air mass trajectories.

Use Pokemon(R) inspired palettes with additional ggplot2 scales. Palettes are the colours in each Pokemon's sprite, ordered by how common they are in the image. The first 386 Pokemon are currently provided.

Displays processing time in a clear and structured way. One function supports iterative workflows by predicting and showing the total time required, while another reports the time taken for individual steps within a process.

Test of linearity originally proposed by Yatchew (1997) <doi:10.1016/S0165-1765(97)00218-8> and improved by de Chaisemartin & D'Haultfoeuille (2024) <doi:10.2139/ssrn.4284811> to be robust under heteroskedasticity.

The official GitLab Runner written in Go. It runs tests and sends the results to GitLab. GitLab CI is the open-source continuous integration service included with GitLab that coordinates the testing.

roman-to-kana is a tool for converting roman (English) text to kana (Japanese).

The first command line argument is taken as the input string:

roman_to_kana "text to be translated"

The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics gene set analysis. The main advantage of this package is, that the retrieved results can be visualized using REACTOME's powerful webapplication. Since Reactome's analysis service also uses R to perfrom the actual gene set analysis you will get similar results when using the same packages (such as limma and edgeR) locally. Therefore, if you only require a gene set analysis, different packages are more suited.

This package implements the pseudo-R2D2 prior for ordinal regression from the paper "Pseudo-R2D2 prior for high-dimensional ordinal regression" by Yanchenko (2025) <doi:10.1007/s11222-025-10667-x>. In particular, it provides code to evaluate the probability distribution function for the cut-points, compute the log-likelihood, calculate the hyper-parameters for the global variance parameter, find the distribution of McFadden's coefficient-of-determination, and fit the model in rstan'. Please cite the paper if you use these codes.

This package provides tools to visualize read coverage from sequencing experiments together with genomic annotations (genes, transcripts, peaks). Introns of long transcripts can be rescaled to a fixed length for better visualization of exonic read coverage.

ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences.

Asynchronous Reliable Extensible Sleek RPC Server for Guile. It's based on nREPL protocol and can be used for programmable interactions with a running guile processes, for implementing REPLs, IDEs, test runners or other tools.

Diff::LCS computes the difference between two Enumerable sequences using the McIlroy-Hunt longest common subsequence (LCS) algorithm. It includes utilities to create a simple HTML diff output format and a standard diff-like tool.

TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.

Analysis of data from unreplicated orthogonal experiments such as 2-level factorial and fractional factorial designs and Plackett-Burman designs using the all possible comparisons (APC) methodology developed by Miller (2005) <doi:10.1198/004017004000000608>.

Easily create tables from data frames/matrices. Create/manipulate tables row-by-row, column-by-column or cell-by-cell. Use common formatting/styling to output rich tables as HTML', HTML widgets or to Excel'.