This package provides a collection of configuration files to help website owners block unwanted AI crawlers from accessing their sites.

Miscellaneous functions commonly used by YuLab-SMU, such as install_zip_gh to install R packages from Github ZIP files.

fog is a Ruby cloud services library. This package provides shared classes and tests for fog providers and services.

The rccol package provides decimal-centered numbers: corresponding digits and decimal separators aligned. Furthermore, rounding to the desired precision is possible.

Rassumfrassum is a LSP/JSONRPC multiplexer that allows one LSP client (Emacs' eglot, Neovim, etc.) to connect to multiple language servers seamlessly.

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Bayes factors and posterior probabilities in Linear models, aimed at provide a formal Bayesian answer to testing and variable selection problems.

Concatenation of multiple sequence alignments based on a correspondence table that can be edited in Excel <doi:10.5281/zenodo.5130603>.

This package provides two variants of multiple correspondence analysis (ca): multiple ca and ordered multiple ca via orthogonal polynomials of Emerson.

Core functions as well as diagnostic and calibration tools for combining matching and linear regression for causal inference in observational studies.

This package creates aesthetically pleasing and informative pie charts, ring charts, bar charts and box plots with colors, patterns, and images.

Calculate (stratified) percentiles on a data.frame Stratification will split the data.frame into subgroups and calculate percentiles for each independently.

This package provides functions to convert data structures among the qtl2', qtl', and DOQTL packages for mapping quantitative trait loci (QTL).

The computer program is an efficient igneous norm algorithm and rock classification system written in R but run as shiny app.

rtracklayer is an extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

This package provides functions to summarize DNA methylation data using regional principal components. Regional principal components are computed using principal components analysis within genomic regions to summarize the variability in methylation levels across CpGs. The number of principal components is chosen using either the Marcenko-Pasteur or Gavish-Donoho method to identify relevant signal in the data.

Recursive lists in the form of R objects, JSON', and XML', for use in teaching and examples. Examples include color palettes, Game of Thrones characters, GitHub users and repositories, music collections, and entities from the Star Wars universe. Data from the gapminder package is also included, as a simple data frame and in nested and split forms.

This package provides tools for estimating, comparing, and visualizing Relative Importance Factor (RIF) indices based on rank-frequency distributions and discrete power-law models. The package provides reproducible workflows for data preparation, model fitting, goodness-of-fit assessment, bootstrap inference, and publication-ready outputs. The implemented methodology is described in Llinas et al. (2026) <doi:10.3390/math14060966>.

This is a collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

This package provides C-based tools for converting large scatterplot data to rasters. It speeds up plotting of data with millions of points.

BOOST-RE is a small, portable, lightweight, and quick, regular expression library for Common Lisp. It is a non-recursive, backtracking VM.

This package provides a Partial native implementation of the liquid ruby gem in C that makes it operate about three times faster.

This package extends the String class and adds a ColorizedString with methods to set text color, background color, and text effects.

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.