Computation of robust standard errors of Poisson fixed effects models, following Wooldridge (1999).

Ruby C bindings to the Yajl JSON stream-based parser library. The API is compatible with the JSON gem, so yajl-ruby can act as a drop in replacement.

A modified copy of yajl is used, and included in the package.

This package implements regression calibration methods for correcting measurement error in regression models using external or internal reliability studies. Methods are described in Carroll, Ruppert, Stefanski, and Crainiceanu (2006) "Measurement Error in Nonlinear Models: A Modern Perspective" <doi:10.1201/9781420010138>.

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

This package creates the radar-boxplot, a plot that was created by the author during his Ph.D. in forest resources. The radar-boxplot is a visualization feature suited for multivariate classification/clustering. It provides an intuitive deep understanding of the data.

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb as GRanges object.

This package implements an API for rewriting sources in an Elixir project powered by sourceror.

Guile-redis provides a Scheme interface to the Redis key-value cache and store.

ChIA-PET example datasets and additional data for use with the diffloop package.

This package provides a package containing an environment representing the Ecoli_ASv2.CDF file.

agilent AMADID 026652 annotation data (chip hgug4845a) assembled using data from public repositories.

Agilent Human 1B annotation data (chip hgug4111a) assembled using data from public repositories.

This package provides a package containing an environment representing the Mouse430_2.cdf file.

This package provides a package containing an environment representing the PrimeView.cdf file.

This package provides a package containing an environment representing the Sugar_Cane.cdf file.

This package provides a collection of tools for the estimation of animals home range.

Implement download buttons in HTML output from rmarkdown without the need for runtime:shiny'.

S3 classes for multivariate optimization using the desirability function by Derringer and Suich (1980).

This package creates ideal data for all distributions in the generalized linear model framework.

Discover OpenID Connect endpoints and authenticate using device flow. Used by MOLGENIS packages.

This package provides tools for calculating Laspeyres, Paasche, and Fisher price and quantity indices.

Includes assorted tools for network analysis. Bridge centrality; goldbricker; MDS, PCA, & eigenmodel network plotting.

Simultaneous/joint diagonalization of local autocovariance matrices to estimate spatio-temporally uncorrelated random fields.

Database of genes which frequently sustain somatic mutations, but are unlikely to drive cancer.