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    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
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pigx-bsseq 0.1.10
Dependencies: coreutils@9.1 sed@4.9 grep@3.11 r-minimal@4.5.0 r-annotationhub@3.16.0 r-dt@0.33 r-genomation@1.40.1 r-ggbio@1.56.0 r-ggrepel@0.9.6 r-matrixstats@1.5.0 r-methylkit@1.34.0 r-reshape2@1.4.4 r-rtracklayer@1.68.0 r-rmarkdown@2.29 r-bookdown@0.43 r-ggplot2@3.5.2 r-ggbio@1.56.0 pandoc@2.19.2 python-wrapper@3.11.11 python-pyyaml@6.0.2 snakemake@7.32.4 bismark@0.24.1 bowtie@2.3.4.3 bwa-meth@0.2.3 fastqc@0.11.9 methyldackel@0.6.1 multiqc@1.14 trim-galore@0.6.6 cutadapt@4.0 samblaster@0.1.26 samtools@1.19
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Synopsis: Bisulfite sequencing pipeline from fastq to methylation reports
Description:

PiGx BSseq is a data processing pipeline for raw fastq read data of bisulfite experiments; it produces reports on aggregate methylation and coverage and can be used to produce information on differential methylation and segmentation.

Total results: 1