_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
pigx-bsseq 0.1.10
Dependencies: coreutils@9.1 sed@4.9 grep@3.11 r-minimal@4.5.2 r-annotationhub@4.0.0 r-dt@0.34.0 r-genomation@1.42.0 r-ggbio@1.58.0 r-ggrepel@0.9.6 r-matrixstats@1.5.0 r-methylkit@1.36.0 r-reshape2@1.4.5 r-rtracklayer@1.70.0 r-rmarkdown@2.30 r-bookdown@0.45 r-ggplot2@4.0.1 r-ggbio@1.58.0 pandoc@2.19.2 python-wrapper@3.11.14 python-pyyaml@6.0.2 snakemake@7.32.4 bismark@0.24.1 bowtie@2.3.4.3 bwa-meth@0.2.9 fastqc@0.11.9 methyldackel@0.6.1 multiqc@1.14 trim-galore@0.6.6 cutadapt@4.0 samblaster@0.1.26 samtools@1.19
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Build system: gnu
Synopsis: Bisulfite sequencing pipeline from fastq to methylation reports
Description:

PiGx BSseq is a data processing pipeline for raw fastq read data of bisulfite experiments; it produces reports on aggregate methylation and coverage and can be used to produce information on differential methylation and segmentation.

Total results: 1