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     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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pigx-bsseq 0.1.10-0.1b3a69b
Dependencies: coreutils@9.1 sed@4.9 grep@3.11 r-minimal@4.6.0 r-annotationhub@4.2.0 r-dt@0.34.0 r-genomation@1.44.0 r-ggbio@1.60.0 r-ggrepel@0.9.8 r-matrixstats@1.5.0 r-methylkit@1.38.0 r-reshape2@1.4.5 r-rtracklayer@1.72.0 r-rmarkdown@2.31 r-bookdown@0.46 r-ggplot2@4.0.3 r-ggbio@1.60.0 pandoc@3.7.0.2 python-wrapper@3.12.12 python-pyyaml@6.0.2 snakemake@8.30.0 bismark@0.24.1 bowtie@2.5.4 bwa-meth@0.2.9 fastqc@0.11.9 methyldackel@0.6.1 multiqc@1.14 trim-galore@0.6.6 cutadapt@4.0 samblaster@0.1.26 samtools@1.19
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Build system: gnu
Synopsis: Bisulfite sequencing pipeline from fastq to methylation reports
Description:

PiGx BSseq is a data processing pipeline for raw fastq read data of bisulfite experiments; it produces reports on aggregate methylation and coverage and can be used to produce information on differential methylation and segmentation.

Total packages: 1