_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
pigx-rnaseq 0.1.1
Dependencies: coreutils@9.1 sed@4.9 gzip@1.14 snakemake@7.32.4 megadepth@1.1.1 multiqc@1.14 star@2.7.3a hisat2@2.2.1 fastp@0.23.2 htseq@2.0.2 samtools@1.19 r-minimal@4.5.0 r-rmarkdown@2.29 r-ggplot2@3.5.2 r-ggpubr@0.6.0 r-ggrepel@0.9.6 r-gprofiler2@0.2.3 r-deseq2@1.48.1 r-dt@0.33 r-knitr@1.50 r-pheatmap@1.0.12 r-corrplot@0.95 r-reshape2@1.4.4 r-plotly@4.10.4 r-scales@1.4.0 r-summarizedexperiment@1.38.1 r-crosstalk@1.2.1 r-tximport@1.36.0 r-rtracklayer@1.68.0 r-rjson@0.2.23 salmon@1.10.3 pandoc@2.19.2 python-wrapper@3.11.11 python-deeptools@3.5.5 python-pyyaml@6.0.2
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Synopsis: Analysis pipeline for RNA sequencing experiments
Description:

PiGX RNAseq is an analysis pipeline for preprocessing and reporting for RNA sequencing experiments. It is easy to use and produces high quality reports. The inputs are reads files from the sequencing experiment, and a configuration file which describes the experiment. In addition to quality control of the experiment, the pipeline produces a differential expression report comparing samples in an easily configurable manner.

Total results: 1