_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
pigx-scrnaseq 1.1.10
Dependencies: coreutils@9.1 perl@5.36.0 fastqc@0.11.9 flexbar@3.4.0 icedtea@3.19.0 jellyfish@2.3.0 python-wrapper@3.11.14 python-pyyaml@6.0.2 python-pandas@2.2.3 python-magic@0.4.27 python-numpy@1.26.4 python-loompy@3.0.7 pandoc@2.19.2 samtools@1.19 snakemake@5.32.2 star@2.7.3a r-minimal@4.5.2 r-argparser@0.7.2 r-cowplot@1.2.0 r-data-table@1.17.8 r-delayedarray@0.36.0 r-delayedmatrixstats@1.32.0 r-dplyr@1.1.4 r-dropbead@0-2.d746c6f r-dt@0.34.0 r-genomicalignments@1.46.0 r-genomicfiles@1.46.0 r-genomicranges@1.62.0 r-ggplot2@4.0.1 r-hdf5array@1.38.0 r-pheatmap@1.0.13 r-rmarkdown@2.30 r-rsamtools@2.26.0 r-rtracklayer@1.70.0 r-rtsne@0.17 r-scater@1.38.0 r-scran@1.38.0 r-seurat@5.3.1 r-singlecellexperiment@1.32.0 r-stringr@1.6.0 r-yaml@2.3.10
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://bioinformatics.mdc-berlin.de/pigx/
Licenses: GPL 3+
Build system: gnu
Synopsis: Analysis pipeline for single-cell RNA sequencing experiments
Description:

PiGX scRNAseq is an analysis pipeline for preprocessing and quality control for single cell RNA sequencing experiments. The inputs are read files from the sequencing experiment, and a configuration file which describes the experiment. It produces processed files for downstream analysis and interactive quality reports. The pipeline is designed to work with UMI based methods.

Total results: 1