_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
python-bio2zarr 0.1.6
Propagated dependencies: python-click@8.3.1 python-coloredlogs@15.0.1 python-humanfriendly@10.0 python-numcodecs@0.13.1 python-numpy@2.3.1 python-pandas@2.3.3 python-tabulate@0.9.0 python-tqdm@4.67.1 python-zarr-2@2.18.7
Channel: guix-arg
Location: guix-arg/packages/python-extra.scm (guix-arg packages python-extra)
Home page: https://github.com/sgkit-dev/bio2zarr
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Convert bioinformatics data to Zarr
Description:

Convert bioinformatics data to Zarr.

python-bio2zarr 0.2.1
Propagated dependencies: python-click@8.4.1 python-coloredlogs@15.0.1 python-cyvcf2@0.31.2 python-humanfriendly@10.0 python-numpy@2.4.6 python-pandas@3.0.3 python-tabulate@0.9.0 python-tqdm@4.67.1 python-tskit@1.0.3 python-zarr@3.2.1
Channel: guix-science
Location: guix-science/packages/bioinformatics.scm (guix-science packages bioinformatics)
Home page: https://sgkit-dev.github.io/bio2zarr/intro.html
Licenses: ASL 2.0
Build system: pyproject
Synopsis: Convert bioinformatics data to Zarr
Description:

bio2zarr efficiently converts common bioinformatics formats to Zarr format.

Tools:

  • vcf2zarr converts VCF data to VCF Zarr format;

  • plink2zarr converts PLINK 1.0 data to VCF Zarr format;

  • tskit2zarr converts tskit data into VCF Zarr format;

  • vcfpartition is a utility to split an input VCF into a given number of partitions;

  • zipzarr is a utility for zipping/unzipping Zarr directory stores.

Total packages: 2