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python-pybio 0.3.12-1.c91fddc
Propagated dependencies: python-beautifulsoup4@4.13.5 python-numpy@1.26.4 python-psutil@7.0.0 python-pysam@0.23.0 python-requests@2.32.5
Channel: guix
Location: gnu/packages/bioinformatics.scm (gnu packages bioinformatics)
Home page: https://github.com/grexor/pybio
Licenses: GPL 3+
Synopsis: Basic genomics toolset
Description:

This tool provides a Python framework to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs. The primary objective of pybio is to simplify genome management. It achieves this by providing automatic download of Ensembl genome assemblies and annotation, provides Python genomic feature search and sequence retrieval from the managed genomes, STAR indexing and mapping and more.

Total results: 2