r-alakazam 1.4.3
Propagated dependencies: r-tidyr@1.3.2 r-tibble@3.3.1 r-stringi@1.8.7 r-seqinr@4.2-44 r-scales@1.4.0 r-rlang@1.2.0 r-readr@2.2.0 r-rcpp@1.1.1-1.1 r-progress@1.2.3 r-matrix@1.7-5 r-iranges@2.46.0 r-igraph@2.3.1 r-ggplot2@4.0.3 r-genomicalignments@1.48.0 r-dplyr@1.2.1 r-biostrings@2.80.1 r-ape@5.8-1 r-airr@2.0.0
Channel: guix-cran
Home page: https://alakazam.readthedocs.io/
Licenses: AGPL 3
Build system: r
Synopsis: Immunoglobulin Clonal Lineage and Diversity Analysis
Description:
This package provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
Total packages: 1