r-alakazam 1.3.0
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-stringi@1.8.4 r-seqinr@4.2-36 r-scales@1.3.0 r-rlang@1.1.4 r-readr@2.1.5 r-rcpp@1.0.13-1 r-progress@1.2.3 r-matrix@1.7-1 r-iranges@2.40.0 r-igraph@2.1.1 r-ggplot2@3.5.1 r-genomicalignments@1.42.0 r-dplyr@1.1.4 r-biostrings@2.74.0 r-ape@5.8 r-airr@1.5.0
Channel: guix-cran
Home page: https://alakazam.readthedocs.io/
Licenses: AGPL 3
Synopsis: Immunoglobulin Clonal Lineage and Diversity Analysis
Description:
This package provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
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