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      /\ \         /\ \ /\ \     /\_\      / /\
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      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
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/_/ /      / / /____\/ /       \ \_\\ \/___/ /
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r-atacseqqc 1.32.0
Propagated dependencies: r-biocgenerics@0.54.0 r-biocparallel@1.42.0 r-biostrings@2.76.0 r-bsgenome@1.76.0 r-chippeakanno@3.42.0 r-edger@4.6.2 r-genomeinfodb@1.44.0 r-genomicalignments@1.44.0 r-genomicranges@1.60.0 r-genomicscores@2.20.0 r-iranges@2.42.0 r-kernsmooth@2.23-26 r-limma@3.64.1 r-motifstack@1.52.0 r-preseqr@4.0.0 r-randomforest@4.7-1.2 r-rsamtools@2.24.0 r-rtracklayer@1.68.0 r-s4vectors@0.46.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/ATACseqQC/
Licenses: GPL 2+
Synopsis: ATAC-seq quality control
Description:

ATAC-seq, an assay for Transposase-Accessible Chromatin using sequencing, is a rapid and sensitive method for chromatin accessibility analysis. It was developed as an alternative method to MNase-seq, FAIRE-seq and DNAse-seq. The ATACseqQC package was developed to help users to quickly assess whether their ATAC-seq experiment is successful. It includes diagnostic plots of fragment size distribution, proportion of mitochondria reads, nucleosome positioning pattern, and CTCF or other Transcript Factor footprints.

Total results: 1