r-biomartr 1.0.7
Propagated dependencies: r-biomart@2.62.0 r-biostrings@2.74.0 r-curl@6.0.1 r-data-table@1.16.2 r-downloader@0.4 r-dplyr@1.1.4 r-fs@1.6.5 r-httr@1.4.7 r-jsonlite@1.8.9 r-philentropy@0.9.0 r-purrr@1.0.2 r-r-utils@2.12.3 r-rcurl@1.98-1.16 r-readr@2.1.5 r-stringr@1.5.1 r-tibble@3.2.1 r-withr@3.0.2 r-xml@3.99-0.17
Channel: guix
Home page: https://docs.ropensci.org/biomartr/
Licenses: GPL 2
Synopsis: Genomic data retrieval
Description:
Perform large scale genomic data retrieval and functional annotation retrieval. This package aims to provide users with a standardized way to automate genome, proteome, RNA, coding sequence (CDS), GFF, and metagenome retrieval from NCBI RefSeq, NCBI Genbank, ENSEMBL, and UniProt databases. Furthermore, an interface to the BioMart database allows users to retrieve functional annotation for genomic loci. In addition, users can download entire databases such as NCBI RefSeq, NCBI nr, NCBI nt, NCBI Genbank, etc with only one command.
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