_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-bsgenome-hsapiens-ucsc-hg38-masked 1.4.5
Propagated dependencies: r-bsgenome@1.74.0 r-bsgenome-hsapiens-ucsc-hg38@1.4.5 r-genomeinfodb@1.42.0
Channel: guix
Location: gnu/packages/bioconductor.scm (gnu packages bioconductor)
Home page: https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.masked
Licenses: Artistic License 2.0
Synopsis: Full masked genomic sequences for Homo sapiens (UCSC version hg38)
Description:

This package provides the complete genome sequences for Homo sapiens as provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). The sequences are the same as in BSgenome.Hsapiens.UCSC.hg38, except that each of them has the 4 following masks on top:

  1. the mask of assembly gaps (AGAPS mask);

  2. the mask of intra-contig ambiguities (AMB mask);

  3. the mask of repeats from RepeatMasker (RM mask);

  4. the mask of repeats from Tandem Repeats Finder (TRF mask).

Only the AGAPS and AMB masks are "active" by default. The sequences are stored in MaskedDNAString objects.

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