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r-cleanupdtseq 1.46.0
Propagated dependencies: r-stringr@1.5.1 r-seqinr@4.2-36 r-s4vectors@0.46.0 r-iranges@2.42.0 r-genomicranges@1.60.0 r-genomeinfodb@1.44.0 r-e1071@1.7-16 r-bsgenome-drerio-ucsc-danrer7@1.4.0 r-bsgenome@1.76.0 r-biostrings@2.76.0
Channel: guix-bioc
Location: guix-bioc/packages/c.scm (guix-bioc packages c)
Home page: https://bioconductor.org/packages/cleanUpdTSeq
Licenses: GPL 2
Synopsis: cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data
Description:

This package implements a Naive Bayes classifier for accurately differentiating true polyadenylation sites (pA sites) from oligo(dT)-mediated 3 end sequencing such as PAS-Seq, PolyA-Seq and RNA-Seq by filtering out false polyadenylation sites, mainly due to oligo(dT)-mediated internal priming during reverse transcription. The classifer is highly accurate and outperforms other heuristic methods.

Total results: 1