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r-dartr-base 1.0.5
Propagated dependencies: r-tidyr@1.3.1 r-stringr@1.5.1 r-stampp@1.6.3 r-snpstats@1.56.0 r-snprelate@1.40.0 r-snpassoc@2.1-2 r-reshape2@1.4.4 r-raster@3.6-30 r-plyr@1.8.9 r-patchwork@1.3.0 r-mass@7.3-61 r-gridextra@2.3 r-ggplot2@3.5.1 r-foreach@1.5.2 r-dplyr@1.1.4 r-data-table@1.16.2 r-dartr-data@1.0.8 r-crayon@1.5.3 r-ape@5.8 r-adegenet@2.1.10
Channel: guix-cran
Location: guix-cran/packages/d.scm (guix-cran packages d)
Home page: https://green-striped-gecko.github.io/dartR/
Licenses: GPL 3+
Synopsis: Analysing 'SNP' and 'Silicodart' Data - Basic Functions
Description:

Facilitates the import and analysis of SNP (single nucleotide polymorphism') and silicodart (presence/absence) data. The main focus is on data generated by DarT (Diversity Arrays Technology), however, data from other sequencing platforms can be used once SNP or related fragment presence/absence data from any source is imported. Genetic datasets are stored in a derived genlight format (package adegenet'), that allows for a very compact storage of data and metadata. Functions are available for importing and exporting of SNP and silicodart data, for reporting on and filtering on various criteria (e.g. callrate', heterozygosity', reproducibility', maximum allele frequency). Additional functions are available for visualization (e.g. Principle Coordinate Analysis) and creating a spatial representation using maps. dartR.base is the base package of the dartRverse suits of packages. To install the other packages, we recommend to install the dartRverse package, that supports the installation of all packages in the dartRverse'. If you want to cite dartR', you find the information by typing citation('dartR.base') in the console.

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