r-hicexperiment 1.6.0
Propagated dependencies: r-vroom@1.6.5 r-strawr@0.0.92 r-s4vectors@0.44.0 r-rhdf5@2.50.0 r-matrix@1.7-1 r-iranges@2.40.0 r-interactionset@1.34.0 r-genomicranges@1.58.0 r-genomeinfodb@1.42.0 r-dplyr@1.1.4 r-biocparallel@1.40.0 r-biocio@1.16.0 r-biocgenerics@0.52.0
Channel: guix-bioc
Home page: https://github.com/js2264/HiCExperiment
Licenses: Expat
Synopsis: Bioconductor class for interacting with Hi-C files in R
Description:
R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro
derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment`
class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment`
instances can be further investigated in R using the `HiContacts`
analysis package.
Total results: 1