r-hicexperiment 1.12.0
Propagated dependencies: r-vroom@1.7.1 r-strawr@0.0.92 r-seqinfo@1.2.0 r-s4vectors@0.50.1 r-rhdf5@2.56.0 r-matrix@1.7-5 r-iranges@2.46.0 r-interactionset@1.40.0 r-genomicranges@1.64.0 r-dplyr@1.2.1 r-biocparallel@1.46.0 r-biocio@1.22.0 r-biocgenerics@0.58.1
Channel: guix-bioc
Home page: https://github.com/js2264/HiCExperiment
Licenses: Expat
Build system: r
Synopsis: Bioconductor class for interacting with Hi-C files in R
Description:
R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.
Total packages: 1