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r-hlatools 1.11.0
Propagated dependencies: r-xfun@0.57 r-tibble@3.3.1 r-stringr@1.6.0 r-rvest@1.0.5 r-fmsb@0.7.6 r-dplyr@1.2.1 r-desctools@0.99.60
Channel: guix-cran
Location: guix-cran/packages/h.scm (guix-cran packages h)
Home page: <https://github.com/sjmack/HLAtools>
Licenses: GPL 3+
Build system: r
Synopsis: Toolkit for HLA Immunogenomics
Description:

This package provides a toolkit for the analysis and management of data for genes in the so-called "Human Leukocyte Antigen" (HLA) region. Functions extract reference data from the Anthony Nolan HLA Informatics Group/ImmunoGeneTics HLA GitHub repository (ANHIG/IMGTHLA) <https://github.com/ANHIG/IMGTHLA>, validate Genotype List (GL) Strings, convert between UNIFORMAT and GL String Code (GLSC) formats, translate HLA alleles and GLSCs across ImmunoPolymorphism Database (IPD) IMGT/HLA Database release versions, identify differences between pairs of alleles at a locus, generate customized, multi-position sequence alignments, trim and convert allele-names across nomenclature epochs, and extend existing data-analysis methods. Tran et al., (2025) <doi:10.1111/iji.70013>.

Total packages: 1