_            _    _        _         _
      /\ \         /\ \ /\ \     /\_\      / /\
      \_\ \       /  \ \\ \ \   / / /     / /  \
      /\__ \     / /\ \ \\ \ \_/ / /     / / /\ \__
     / /_ \ \   / / /\ \ \\ \___/ /     / / /\ \___\
    / / /\ \ \ / / /  \ \_\\ \ \_/      \ \ \ \/___/
   / / /  \/_// / /   / / / \ \ \        \ \ \
  / / /      / / /   / / /   \ \ \   _    \ \ \
 / / /      / / /___/ / /     \ \ \ /_/\__/ / /
/_/ /      / / /____\/ /       \ \_\\ \/___/ /
\_\/       \/_________/         \/_/ \_____\/
r-msa2dist 1.10.1
Propagated dependencies: r-tidyr@1.3.1 r-tibble@3.2.1 r-stringr@1.5.1 r-stringi@1.8.4 r-seqinr@4.2-36 r-rlang@1.1.4 r-rcppthread@2.1.7 r-rcpp@1.0.13-1 r-pwalign@1.2.0 r-iranges@2.40.0 r-genomicranges@1.58.0 r-foreach@1.5.2 r-dplyr@1.1.4 r-doparallel@1.0.17 r-biostrings@2.74.0 r-ape@5.8
Channel: guix-bioc
Location: guix-bioc/packages/m.scm (guix-bioc packages m)
Home page: https://gitlab.gwdg.de/mpievolbio-it/MSA2dist
Licenses: FSDG-compatible
Synopsis: MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
Description:

MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances MSA2dist calculates pairwise IUPAC distances.

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